Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PDGFRAP16234 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
PDGFRAP16234 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
PDGFRAP16234 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.52■□□□□ 0.88
PDGFRAP16234 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PDGFRAP16234 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
PDGFRAP16234 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
PDGFRAP16234 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
PDGFRAP16234 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PDGFRAP16234 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.51■□□□□ 0.87
PDGFRAP16234 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFRAP16234 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.51■□□□□ 0.87
PDGFRAP16234 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PDGFRAP16234 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.51■□□□□ 0.87
PDGFRAP16234 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.51■□□□□ 0.87
PDGFRAP16234 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PDGFRAP16234 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
PDGFRAP16234 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFRAP16234 GCSHP5-201ENST00000443090 522 ntBASIC20.51■□□□□ 0.87
PDGFRAP16234 AL158047.1-201ENST00000445918 881 ntBASIC20.51■□□□□ 0.87
PDGFRAP16234 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.51■□□□□ 0.87
PDGFRAP16234 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFRAP16234 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
PDGFRAP16234 AC142381.4-202ENST00000563973 229 ntBASIC20.51■□□□□ 0.87
PDGFRAP16234 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.51■□□□□ 0.87
PDGFRAP16234 AIRN-201ENST00000601203 4374 ntBASIC20.51■□□□□ 0.87
PDGFRAP16234 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
PDGFRAP16234 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFRAP16234 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PDGFRAP16234 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
PDGFRAP16234 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDGFRAP16234 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PDGFRAP16234 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.5■□□□□ 0.87
PDGFRAP16234 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.5■□□□□ 0.87
PDGFRAP16234 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.5■□□□□ 0.87
PDGFRAP16234 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PDGFRAP16234 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
PDGFRAP16234 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.5■□□□□ 0.87
PDGFRAP16234 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.5■□□□□ 0.87
PDGFRAP16234 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.5■□□□□ 0.87
PDGFRAP16234 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.5■□□□□ 0.87
PDGFRAP16234 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.5■□□□□ 0.87
PDGFRAP16234 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDGFRAP16234 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
PDGFRAP16234 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.49■□□□□ 0.87
PDGFRAP16234 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PDGFRAP16234 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.49■□□□□ 0.87
PDGFRAP16234 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.49■□□□□ 0.87
PDGFRAP16234 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 YBX1P10-201ENST00000444752 975 ntBASIC20.49■□□□□ 0.87
PDGFRAP16234 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.49■□□□□ 0.87
PDGFRAP16234 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
PDGFRAP16234 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 C1QBPP2-201ENST00000528754 825 ntBASIC20.49■□□□□ 0.87
PDGFRAP16234 PRKY-204ENST00000533551 1019 ntBASIC20.49■□□□□ 0.87
PDGFRAP16234 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.49■□□□□ 0.87
PDGFRAP16234 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.49■□□□□ 0.87
PDGFRAP16234 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PDGFRAP16234 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.49■□□□□ 0.87
PDGFRAP16234 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.49■□□□□ 0.87
PDGFRAP16234 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
PDGFRAP16234 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDGFRAP16234 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
PDGFRAP16234 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.48■□□□□ 0.87
PDGFRAP16234 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.48■□□□□ 0.87
PDGFRAP16234 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PDGFRAP16234 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.48■□□□□ 0.87
PDGFRAP16234 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms