Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
HLA-DQA1P01909 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 MIR3181-201ENST00000578512 73 ntBASIC14.69□□□□□ -0.06
HLA-DQA1P01909 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
HLA-DQA1P01909 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 PRORSD1P-202ENST00000563365 2154 ntBASIC14.68□□□□□ -0.06
HLA-DQA1P01909 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 AC006333.2-201ENST00000607957 2099 ntBASIC14.68□□□□□ -0.06
HLA-DQA1P01909 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HLA-DQA1P01909 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.67□□□□□ -0.06
HLA-DQA1P01909 AC009237.3-201ENST00000393279 1427 ntBASIC14.66□□□□□ -0.06
HLA-DQA1P01909 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.66□□□□□ -0.06
HLA-DQA1P01909 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms