Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.9■□□□□ 0.62
CLDN9O95484 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.9■□□□□ 0.62
CLDN9O95484 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
CLDN9O95484 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN9O95484 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN9O95484 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN9O95484 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.9■□□□□ 0.62
CLDN9O95484 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CLDN9O95484 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN9O95484 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN9O95484 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN9O95484 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.9■□□□□ 0.62
CLDN9O95484 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.9■□□□□ 0.62
CLDN9O95484 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN9O95484 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CLDN9O95484 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.89■□□□□ 0.62
CLDN9O95484 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.62
CLDN9O95484 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CLDN9O95484 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.62
CLDN9O95484 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.89■□□□□ 0.61
CLDN9O95484 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 AC069152.1-201ENST00000438030 544 ntBASIC18.89■□□□□ 0.61
CLDN9O95484 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.89■□□□□ 0.61
CLDN9O95484 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.89■□□□□ 0.61
CLDN9O95484 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.89■□□□□ 0.61
CLDN9O95484 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.89■□□□□ 0.61
CLDN9O95484 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.89■□□□□ 0.61
CLDN9O95484 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.89■□□□□ 0.61
CLDN9O95484 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CLDN9O95484 AC104771.1-201ENST00000603335 964 ntBASIC18.89■□□□□ 0.61
CLDN9O95484 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.89■□□□□ 0.61
CLDN9O95484 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CLDN9O95484 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CLDN9O95484 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.89■□□□□ 0.61
CLDN9O95484 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.89■□□□□ 0.61
CLDN9O95484 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN9O95484 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN9O95484 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CLDN9O95484 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN9O95484 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.88■□□□□ 0.61
CLDN9O95484 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 AC090192.1-201ENST00000517740 490 ntBASIC18.88■□□□□ 0.61
CLDN9O95484 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.88■□□□□ 0.61
CLDN9O95484 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.88■□□□□ 0.61
CLDN9O95484 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.88■□□□□ 0.61
CLDN9O95484 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
CLDN9O95484 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.88■□□□□ 0.61
CLDN9O95484 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.88■□□□□ 0.61
CLDN9O95484 AL121906.2-201ENST00000621597 723 ntBASIC18.88■□□□□ 0.61
CLDN9O95484 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CLDN9O95484 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.88■□□□□ 0.61
CLDN9O95484 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CLDN9O95484 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN9O95484 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN9O95484 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN9O95484 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.87■□□□□ 0.61
CLDN9O95484 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN9O95484 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN9O95484 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN9O95484 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN9O95484 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CLDN9O95484 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CLDN9O95484 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CLDN9O95484 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.87■□□□□ 0.61
CLDN9O95484 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.87■□□□□ 0.61
CLDN9O95484 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.87■□□□□ 0.61
CLDN9O95484 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.87■□□□□ 0.61
CLDN9O95484 AC142086.2-201ENST00000569753 217 ntBASIC18.87■□□□□ 0.61
CLDN9O95484 AC120498.8-201ENST00000614275 531 ntBASIC18.87■□□□□ 0.61
CLDN9O95484 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CLDN9O95484 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.86■□□□□ 0.61
CLDN9O95484 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.86■□□□□ 0.61
CLDN9O95484 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN9O95484 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CLDN9O95484 AP006587.1-201ENST00000534129 1502 ntBASIC18.86■□□□□ 0.61
CLDN9O95484 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN9O95484 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN9O95484 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.86■□□□□ 0.61
CLDN9O95484 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CLDN9O95484 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms