Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB3O75112 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
LDB3O75112 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB3O75112 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB3O75112 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB3O75112 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.41■□□□□ 0.54
LDB3O75112 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.41■□□□□ 0.54
LDB3O75112 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.41■□□□□ 0.54
LDB3O75112 AC110285.5-201ENST00000611501 352 ntBASIC18.41■□□□□ 0.54
LDB3O75112 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDB3O75112 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LDB3O75112 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB3O75112 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.4■□□□□ 0.54
LDB3O75112 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.4■□□□□ 0.54
LDB3O75112 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDB3O75112 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.4■□□□□ 0.54
LDB3O75112 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
LDB3O75112 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB3O75112 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.4■□□□□ 0.54
LDB3O75112 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB3O75112 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB3O75112 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
LDB3O75112 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.4■□□□□ 0.54
LDB3O75112 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.4■□□□□ 0.54
LDB3O75112 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.4■□□□□ 0.54
LDB3O75112 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.4■□□□□ 0.54
LDB3O75112 AC133681.1-201ENST00000465482 601 ntBASIC18.4■□□□□ 0.54
LDB3O75112 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
LDB3O75112 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
LDB3O75112 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.4■□□□□ 0.54
LDB3O75112 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.4■□□□□ 0.54
LDB3O75112 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
LDB3O75112 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
LDB3O75112 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.4■□□□□ 0.54
LDB3O75112 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB3O75112 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
LDB3O75112 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
LDB3O75112 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LDB3O75112 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
LDB3O75112 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB3O75112 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB3O75112 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
LDB3O75112 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB3O75112 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB3O75112 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
LDB3O75112 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.39■□□□□ 0.53
LDB3O75112 GCSHP5-201ENST00000443090 522 ntBASIC18.39■□□□□ 0.53
LDB3O75112 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB3O75112 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB3O75112 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB3O75112 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.39■□□□□ 0.53
LDB3O75112 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB3O75112 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.39■□□□□ 0.53
LDB3O75112 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.39■□□□□ 0.53
LDB3O75112 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB3O75112 TREX1-205ENST00000625293 1783 ntBASIC18.39■□□□□ 0.53
LDB3O75112 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.39■□□□□ 0.53
LDB3O75112 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
LDB3O75112 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.38■□□□□ 0.53
LDB3O75112 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LDB3O75112 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.38■□□□□ 0.53
LDB3O75112 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
LDB3O75112 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.38■□□□□ 0.53
LDB3O75112 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
LDB3O75112 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
LDB3O75112 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.38■□□□□ 0.53
LDB3O75112 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.38■□□□□ 0.53
LDB3O75112 AC004264.1-201ENST00000608354 794 ntBASIC18.38■□□□□ 0.53
LDB3O75112 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.38■□□□□ 0.53
LDB3O75112 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.38■□□□□ 0.53
LDB3O75112 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
LDB3O75112 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.38■□□□□ 0.53
LDB3O75112 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
LDB3O75112 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
LDB3O75112 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.37■□□□□ 0.53
LDB3O75112 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.37■□□□□ 0.53
LDB3O75112 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms