Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TNRC18P3-201ENST00000441896 2691 ntBASIC19.59■□□□□ 0.73
SHOX2O60902 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SHOX2O60902 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.59■□□□□ 0.73
SHOX2O60902 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SHOX2O60902 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.59■□□□□ 0.73
SHOX2O60902 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.59■□□□□ 0.73
SHOX2O60902 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SHOX2O60902 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
SHOX2O60902 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.58■□□□□ 0.73
SHOX2O60902 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.58■□□□□ 0.73
SHOX2O60902 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SHOX2O60902 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.58■□□□□ 0.72
SHOX2O60902 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
SHOX2O60902 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
SHOX2O60902 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SHOX2O60902 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 AC106820.2-201ENST00000563775 3264 ntBASIC19.57■□□□□ 0.72
SHOX2O60902 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SHOX2O60902 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SHOX2O60902 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.57■□□□□ 0.72
SHOX2O60902 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SHOX2O60902 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SHOX2O60902 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.57■□□□□ 0.72
SHOX2O60902 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 KRT16P2-201ENST00000414673 1423 ntBASIC19.57■□□□□ 0.72
SHOX2O60902 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.57■□□□□ 0.72
SHOX2O60902 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SHOX2O60902 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.57■□□□□ 0.72
SHOX2O60902 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SHOX2O60902 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.56■□□□□ 0.72
SHOX2O60902 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.56■□□□□ 0.72
SHOX2O60902 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.56■□□□□ 0.72
SHOX2O60902 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.56■□□□□ 0.72
SHOX2O60902 AC131281.2-201ENST00000520478 145 ntBASIC19.56■□□□□ 0.72
SHOX2O60902 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.56■□□□□ 0.72
SHOX2O60902 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.56■□□□□ 0.72
SHOX2O60902 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SHOX2O60902 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SHOX2O60902 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SHOX2O60902 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SHOX2O60902 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms