Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH4O15457 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC22.01■■□□□ 1.11
MSH4O15457 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 KSR1P1-201ENST00000446298 240 ntBASIC22.01■■□□□ 1.11
MSH4O15457 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.01■■□□□ 1.11
MSH4O15457 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH4O15457 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC22.01■■□□□ 1.11
MSH4O15457 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
MSH4O15457 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH4O15457 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.01■■□□□ 1.11
MSH4O15457 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH4O15457 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.01■■□□□ 1.11
MSH4O15457 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
MSH4O15457 SRI-203ENST00000419179 1307 ntTSL 2 BASIC22.01■■□□□ 1.11
MSH4O15457 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC22.01■■□□□ 1.11
MSH4O15457 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
MSH4O15457 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
MSH4O15457 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
MSH4O15457 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH4O15457 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH4O15457 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC22■■□□□ 1.11
MSH4O15457 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC22■■□□□ 1.11
MSH4O15457 AL445675.2-201ENST00000620291 557 ntBASIC22■■□□□ 1.11
MSH4O15457 CR392000.1-201ENST00000624770 1228 ntBASIC22■■□□□ 1.11
MSH4O15457 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH4O15457 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
MSH4O15457 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22■■□□□ 1.11
MSH4O15457 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22■■□□□ 1.11
MSH4O15457 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
MSH4O15457 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC22■■□□□ 1.11
MSH4O15457 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
MSH4O15457 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH4O15457 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH4O15457 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH4O15457 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH4O15457 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH4O15457 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.99■■□□□ 1.11
MSH4O15457 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH4O15457 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.99■■□□□ 1.11
MSH4O15457 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
MSH4O15457 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.99■■□□□ 1.11
MSH4O15457 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
MSH4O15457 AFG3L1P-217ENST00000557444 2447 ntBASIC21.99■■□□□ 1.11
MSH4O15457 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
MSH4O15457 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
MSH4O15457 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.98■■□□□ 1.11
MSH4O15457 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
MSH4O15457 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
MSH4O15457 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.98■■□□□ 1.11
MSH4O15457 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.98■■□□□ 1.11
MSH4O15457 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.98■■□□□ 1.11
MSH4O15457 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
MSH4O15457 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.98■■□□□ 1.11
MSH4O15457 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
MSH4O15457 KRT16P1-201ENST00000399124 1418 ntBASIC21.97■■□□□ 1.11
MSH4O15457 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.97■■□□□ 1.11
MSH4O15457 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.97■■□□□ 1.11
MSH4O15457 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH4O15457 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
MSH4O15457 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.97■■□□□ 1.11
MSH4O15457 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
MSH4O15457 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
MSH4O15457 TREX1-205ENST00000625293 1783 ntBASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms