Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 EPYC-201ENST00000261172 1539 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 TPD52-213ENST00000520527 2638 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 AC027097.2-201ENST00000588925 1976 ntTSL 2 BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 CTAGE3P-201ENST00000454280 2404 ntBASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC7.77□□□□□ -1.17
LIMD1Q9UGP4 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 NQO1-201ENST00000320623 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 CKAP2P1-201ENST00000555477 2049 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 CASC19-221ENST00000641309 1382 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 CYP4A11-201ENST00000310638 2530 ntAPPRIS P2 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 RNU6-451P-201ENST00000362921 107 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 RNU6-251P-201ENST00000363235 104 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 SSX6-201ENST00000376932 562 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 NFIB-202ENST00000380924 840 ntTSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 MIR621-201ENST00000384919 96 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 TRBV19-201ENST00000390393 552 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 NPM1P38-201ENST00000403835 865 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 PDCL2P1-201ENST00000419302 352 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 RNU6-445P-201ENST00000516949 107 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 RN7SKP283-201ENST00000517197 270 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 SERPINA15P-201ENST00000529287 266 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AP003032.2-201ENST00000533697 686 ntTSL 3 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC008127.2-201ENST00000549925 1075 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC006967.3-201ENST00000594086 1093 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC068790.5-201ENST00000602741 355 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC092960.1-201ENST00000604762 351 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AL121655.1-201ENST00000605811 308 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AL356274.1-201ENST00000617064 410 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC012629.3-201ENST00000623397 328 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 PDE4B-206ENST00000423207 4546 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC008676.2-202ENST00000509655 1992 ntTSL 2 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 OFD1P17-201ENST00000437639 3018 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AL590065.1-201ENST00000603371 4774 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 OSGIN2-201ENST00000297438 4209 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 ERVFRD-1-202ENST00000542862 3184 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 AC036108.4-201ENST00000611654 2516 ntBASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
LIMD1Q9UGP4 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 SLC4A4-203ENST00000351898 3771 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 AC024560.2-201ENST00000507981 1497 ntBASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 TRIM16-212ENST00000578237 3206 ntAPPRIS P1 TSL 5 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 NLRP9-201ENST00000332836 3484 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 LINC02150-201ENST00000513157 2120 ntTSL 5 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 CACNB4-269ENST00000638005 4615 ntTSL 2 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 B3GNT5-206ENST00000465010 1766 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 AC009220.2-201ENST00000489759 1751 ntBASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 RN7SKP36-201ENST00000363997 312 ntBASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 RPA3-203ENST00000401447 414 ntTSL 3 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 SNRPFP1-201ENST00000414761 252 ntBASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 AL589872.1-201ENST00000426602 288 ntBASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 AC073069.1-201ENST00000428657 441 ntBASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 RPEP2-201ENST00000432149 701 ntBASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 CXCR2P1-202ENST00000443392 1074 ntBASIC7.75□□□□□ -1.17
LIMD1Q9UGP4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms