Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MTND6P18-201ENST00000439477 513 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AL450023.3-201ENST00000440592 271 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 RPS11P7-201ENST00000442125 465 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 NPM1P39-201ENST00000449818 867 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA3P55318 ACA64.1-201ENST00000459171 127 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 RPS17P2-201ENST00000461663 408 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 RN7SL817P-201ENST00000480777 288 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AC008410.1-201ENST00000483777 339 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AL117692.1-201ENST00000494283 713 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AC025458.1-201ENST00000506046 166 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA3P55318 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC3.75□□□□□ -1.81
FOXA3P55318 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA3P55318 AK6-204ENST00000512561 587 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC3.75□□□□□ -1.81
FOXA3P55318 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA3P55318 CASP1P2-201ENST00000526830 1258 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA3P55318 DERA-209ENST00000532964 854 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA3P55318 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC3.75□□□□□ -1.81
FOXA3P55318 LINC02259-202ENST00000565543 438 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA3P55318 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA3P55318 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC3.75□□□□□ -1.81
FOXA3P55318 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA3P55318 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 AC132068.1-201ENST00000623805 459 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AC007683.2-201ENST00000624681 714 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 5S_rRNA.28-201ENST00000638107 119 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 AC132825.8-201ENST00000640783 297 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 KARSP1-201ENST00000451871 1752 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA3P55318 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA3P55318 OR51C1P-202ENST00000641159 1444 ntBASIC3.75□□□□□ -1.81
FOXA3P55318 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
FOXA3P55318 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA3P55318 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
FOXA3P55318 LINC01109-201ENST00000603837 3081 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA3P55318 EEF1A1P42-201ENST00000613436 1331 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA3P55318 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA3P55318 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA3P55318 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA3P55318 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC3.74□□□□□ -1.81
FOXA3P55318 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA3P55318 RN7SKP104-201ENST00000362605 328 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 RN7SKP113-201ENST00000363891 295 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 SNORD96B-201ENST00000386148 79 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
FOXA3P55318 AL359885.1-201ENST00000415786 903 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 Z82198.3-201ENST00000421145 199 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA3P55318 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA3P55318 RPS27P18-201ENST00000431701 247 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA3P55318 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA3P55318 KF459542.1-201ENST00000450908 553 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 CEACAMP11-201ENST00000455211 583 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 SIAH1P1-201ENST00000479411 923 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 RN7SL568P-201ENST00000493069 298 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 CBX1-205ENST00000495350 550 ntTSL 2 BASIC3.74□□□□□ -1.81
FOXA3P55318 EEF1A1P25-201ENST00000495704 1267 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA3P55318 MRPS5P3-201ENST00000515577 166 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 RNA5SP373-201ENST00000517271 95 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 AC012400.1-201ENST00000518452 381 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 RAB30-209ENST00000532548 644 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA3P55318 AC107918.3-201ENST00000533272 382 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC3.74□□□□□ -1.81
FOXA3P55318 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
FOXA3P55318 AL845552.1-201ENST00000556820 323 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC3.74□□□□□ -1.81
FOXA3P55318 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC3.74□□□□□ -1.81
FOXA3P55318 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA3P55318 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC3.74□□□□□ -1.81
FOXA3P55318 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC3.74□□□□□ -1.81
FOXA3P55318 HCG18-243ENST00000602498 327 ntTSL 3 BASIC3.74□□□□□ -1.81
FOXA3P55318 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC3.74□□□□□ -1.81
FOXA3P55318 AC092747.4-201ENST00000620519 1861 ntBASIC3.74□□□□□ -1.81
FOXA3P55318 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC3.74□□□□□ -1.81
FOXA3P55318 AC135068.12-201ENST00000637370 931 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 161.1 ms