Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL359955.1-201ENST00000455242 3275 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC003973.3-201ENST00000624863 2822 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 SNORA5.1-201ENST00000384275 131 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 RNU1-106P-201ENST00000384382 164 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 RNU1-77P-201ENST00000390868 162 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AL353692.2-201ENST00000407054 335 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 PTGES3P2-201ENST00000407942 482 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 RN7SKP29-201ENST00000410957 272 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AL133325.1-201ENST00000421090 382 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC245028.1-201ENST00000423259 256 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC113412.1-201ENST00000425840 504 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 CUBNP2-201ENST00000443534 1139 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 NDUFAF4P2-201ENST00000445374 520 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 SDC4P-201ENST00000453285 601 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 OSTCP1-201ENST00000455507 450 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 MRE11P1-201ENST00000464884 2127 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC108729.2-201ENST00000476543 840 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 RN7SL481P-201ENST00000477764 299 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 RAB9BP1-201ENST00000519581 626 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 VTA1P2-201ENST00000520205 911 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 MRPS16P1-201ENST00000523462 412 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC010487.1-201ENST00000594408 1172 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 BNIP3P19-201ENST00000605397 577 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC126915.2-201ENST00000610957 190 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AL158062.1-201ENST00000619632 745 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC097460.3-201ENST00000623099 442 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC092159.4-201ENST00000624944 550 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 AC107021.2-201ENST00000567714 2095 ntBASIC5.46□□□□□ -1.54
COL28A1Q2UY09 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL28A1Q2UY09 THAP12P9-201ENST00000503971 2360 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AL359715.3-201ENST00000569267 2123 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 CDC27P2-201ENST00000425026 1922 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AC005294.1-201ENST00000355509 281 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AC093084.1-201ENST00000424233 687 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AP000547.1-201ENST00000454360 617 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 MTND2P6-201ENST00000455337 1030 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 LDHBP2-201ENST00000456969 1005 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 RN7SL385P-201ENST00000468873 276 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 RPS17P15-201ENST00000475609 349 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 SUMO2P4-201ENST00000504193 276 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AC021146.7-201ENST00000509604 775 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AC110775.1-201ENST00000513721 462 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 NOP56P3-201ENST00000549457 385 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AC122134.1-202ENST00000569111 1201 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 TXNP4-201ENST00000575018 310 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 FAM106CP-201ENST00000582212 507 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 DNAJC19P3-201ENST00000594491 331 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AC120053.1-201ENST00000607706 736 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AL163051.2-201ENST00000618976 735 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 AP002799.1-201ENST00000623552 423 ntBASIC5.45□□□□□ -1.54
COL28A1Q2UY09 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 137.8 ms