Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
TREX1Q9NSU2 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 PABPC1P6-201ENST00000445594 1829 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 HSPA8P14-201ENST00000552265 1805 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 RNA5SP435-201ENST00000364044 108 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AC079355.1-201ENST00000421770 223 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 NANOGP4-201ENST00000427230 913 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AL691482.1-201ENST00000453255 87 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AL356981.1-201ENST00000454879 684 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 HMGB1P4-201ENST00000455362 567 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AC097484.1-201ENST00000471148 389 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 OR11I1P-201ENST00000486033 954 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AC072052.1-201ENST00000496556 306 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 HNRNPRP2-201ENST00000528421 743 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 LSM3P2-201ENST00000551246 273 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 OR11J2P-201ENST00000555298 907 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AC022467.1-201ENST00000614738 749 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AC006840.1-201ENST00000623069 542 ntBASIC5.05□□□□□ -1.6
TREX1Q9NSU2 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TREX1Q9NSU2 TCP11X1-202ENST00000622971 1372 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC007996.1-201ENST00000620414 2821 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AL603750.1-201ENST00000624216 1717 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 RPL10P10-201ENST00000403509 664 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC013429.2-201ENST00000418798 781 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 DDX39BP1-205ENST00000422507 192 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AL354714.3-201ENST00000447284 493 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 IGHV5-78-201ENST00000450948 295 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC016724.1-201ENST00000453215 421 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 RN7SL222P-201ENST00000476452 299 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 SNRPCP2-201ENST00000504370 475 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 RPL7L1P4-201ENST00000513004 707 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.04□□□□□ -1.6
TREX1Q9NSU2 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.04□□□□□ -1.6
TREX1Q9NSU2 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms