Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 MTCO1P11-201ENST00000429111 1528 ntBASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 PART1-203ENST00000515734 2569 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 MFSD8-227ENST00000641393 4069 ntBASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 CCDC150-201ENST00000389175 3685 ntAPPRIS P2 TSL 5 BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 NKRF-201ENST00000304449 3269 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
LIMD1Q9UGP4 USP37-204ENST00000418019 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 CTD-2201I18.1-202ENST00000514042 2705 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 RNF6P1-201ENST00000444889 1784 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC090017.1-201ENST00000548612 1779 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 PRLR-202ENST00000310101 1297 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 MS4A3-203ENST00000395032 867 ntTSL 2 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 GGA1-205ENST00000405147 575 ntTSL 4 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 RNU6-373P-201ENST00000411247 98 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 GRIK1-AS1-202ENST00000412579 818 ntTSL 5 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 MTND2P23-201ENST00000422990 651 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC134879.1-201ENST00000426062 394 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AL365400.1-201ENST00000431854 640 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 TAAR7P-201ENST00000436141 242 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 RPL7P54-201ENST00000438336 674 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 RPL22P17-201ENST00000438729 315 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 DBIL5P2-201ENST00000443827 253 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC022080.2-201ENST00000452932 533 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 ALG13-211ENST00000473389 693 ntTSL 2 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC108688.1-201ENST00000485817 713 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC013356.1-201ENST00000489027 564 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC079594.1-201ENST00000489757 331 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC025674.1-201ENST00000507074 324 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC006390.1-201ENST00000508068 283 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC233724.10-201ENST00000510454 409 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 RNU6-327P-201ENST00000516270 127 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 SCARNA6.1-201ENST00000516989 238 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC087360.1-201ENST00000518788 616 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 COX6B1P6-201ENST00000522347 255 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC022690.1-201ENST00000526681 550 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC078814.3-201ENST00000553036 491 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC138749.2-201ENST00000566048 167 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 RN7SL66P-201ENST00000582099 264 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 HMGN1P30-201ENST00000589286 268 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 BNIP3P22-201ENST00000593399 556 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC011891.2-201ENST00000604949 397 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 MIAT_exon1.1-201ENST00000617016 135 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC005841.2-201ENST00000637658 1167 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC009948.5-201ENST00000624360 4406 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 RAI14-205ENST00000503673 3339 ntAPPRIS P1 TSL 2 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 YME1L1-201ENST00000326799 3994 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 NBR1-201ENST00000341165 4656 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 AC130360.2-201ENST00000533477 1556 ntBASIC7.8□□□□□ -1.16
LIMD1Q9UGP4 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 LINC01677-204ENST00000635342 1329 ntTSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 OR11H5P-202ENST00000641612 1325 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 SUPT20H-224ENST00000542180 2478 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 MAPK10-279ENST00000641157 2449 ntBASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 P2RY14-201ENST00000309170 2513 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC7.79□□□□□ -1.16
LIMD1Q9UGP4 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms