Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC6.6□□□□□ -1.35
COL8A1P27658 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL8A1P27658 MAPK10-329ENST00000641555 2656 ntBASIC6.6□□□□□ -1.35
COL8A1P27658 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC6.6□□□□□ -1.35
COL8A1P27658 LDB2-203ENST00000502640 2626 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL8A1P27658 TCF4-203ENST00000398339 2551 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL8A1P27658 CCDC39-201ENST00000442201 3279 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL8A1P27658 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 MAPK10-333ENST00000641607 2481 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 CHD7-202ENST00000524602 3456 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
COL8A1P27658 ZNF613-201ENST00000293471 3419 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 LINC01180-201ENST00000589259 2025 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 HPSE2-204ENST00000404542 3681 ntTSL 5 BASIC6.59□□□□□ -1.35
COL8A1P27658 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC6.59□□□□□ -1.35
COL8A1P27658 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 YAF2-201ENST00000327791 4156 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC6.59□□□□□ -1.35
COL8A1P27658 TSC22D1-213ENST00000622051 2872 ntTSL 2 BASIC6.59□□□□□ -1.35
COL8A1P27658 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
COL8A1P27658 RNU6-379P-201ENST00000363813 104 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 Y_RNA.184-201ENST00000363884 108 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 RNU1-11P-201ENST00000383975 164 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 SNORA10B-201ENST00000384458 133 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC025750.1-201ENST00000399891 379 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 MTND3P8-201ENST00000412909 339 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC079807.1-201ENST00000429993 481 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 RPL35P8-201ENST00000433284 337 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC009961.2-201ENST00000435771 251 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC092601.1-201ENST00000444526 383 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AL845321.1-201ENST00000444603 348 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AL512649.2-201ENST00000446206 597 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 AL161454.1-201ENST00000446226 569 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 C1DP4-201ENST00000455429 424 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 AC063943.1-201ENST00000465434 453 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 RN7SL37P-201ENST00000490461 307 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC079768.1-201ENST00000503181 711 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 HNRNPA1P44-201ENST00000503999 879 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 SNX5P1-201ENST00000505757 1041 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC108064.1-201ENST00000513791 460 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 ARL6IP1P1-201ENST00000545836 610 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.59□□□□□ -1.35
COL8A1P27658 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC063950.1-201ENST00000552036 308 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC055876.1-202ENST00000567053 138 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC005726.4-201ENST00000582858 458 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC005357.1-201ENST00000588399 301 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC011500.1-201ENST00000601963 469 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 ANKRD20A19P-203ENST00000602724 295 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 COX6CP16-201ENST00000603667 216 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC6.59□□□□□ -1.35
COL8A1P27658 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.59□□□□□ -1.35
COL8A1P27658 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
COL8A1P27658 AC233280.20-201ENST00000637412 416 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 AC138649.5-201ENST00000637456 137 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 CHODL-203ENST00000400127 2239 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.59□□□□□ -1.35
COL8A1P27658 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC6.59□□□□□ -1.35
COL8A1P27658 NFIB-205ENST00000380959 8198 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC6.59□□□□□ -1.35
COL8A1P27658 C1QTNF7-201ENST00000295297 4516 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 AC009148.1-201ENST00000570148 2693 ntBASIC6.59□□□□□ -1.35
COL8A1P27658 EFCAB1-201ENST00000262103 2051 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL8A1P27658 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL8A1P27658 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC6.59□□□□□ -1.36
COL8A1P27658 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL8A1P27658 FAM13A-205ENST00000503556 3386 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL8A1P27658 CDC40-203ENST00000368932 3933 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
COL8A1P27658 ZMYND11-216ENST00000602682 1687 ntTSL 5 BASIC6.58□□□□□ -1.36
COL8A1P27658 AC008985.1-201ENST00000624169 2239 ntBASIC6.58□□□□□ -1.36
COL8A1P27658 WDR44-201ENST00000254029 4111 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL8A1P27658 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL8A1P27658 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL8A1P27658 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms