Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC8.05□□□□□ -1.12
COL9A1P20849 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC8.05□□□□□ -1.12
COL9A1P20849 NPM1P51-201ENST00000443470 744 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 AC104651.2-201ENST00000447549 528 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 MTND3P16-201ENST00000452205 344 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 TDGF1P6-201ENST00000463873 448 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 PFN1P6-201ENST00000476786 399 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 AC079080.1-201ENST00000479841 822 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC8.05□□□□□ -1.12
COL9A1P20849 AC110794.1-201ENST00000505816 425 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC8.05□□□□□ -1.12
COL9A1P20849 PGAM4P2-201ENST00000512491 721 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 STX18-IT1-201ENST00000515487 542 ntTSL 4 BASIC8.05□□□□□ -1.12
COL9A1P20849 RPS20-202ENST00000518875 671 ntTSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 RANP9-201ENST00000519957 271 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 AC084026.2-201ENST00000521101 642 ntTSL 3 BASIC8.05□□□□□ -1.12
COL9A1P20849 AC090692.1-201ENST00000531569 541 ntTSL 3 BASIC8.05□□□□□ -1.12
COL9A1P20849 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC8.05□□□□□ -1.12
COL9A1P20849 MRPL40P1-201ENST00000542687 604 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC8.05□□□□□ -1.12
COL9A1P20849 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC8.05□□□□□ -1.12
COL9A1P20849 AC138749.2-201ENST00000566048 167 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 SSX2B-202ENST00000596480 1291 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 AC068631.1-229ENST00000599314 739 ntTSL 5 BASIC8.05□□□□□ -1.12
COL9A1P20849 AC007255.2-201ENST00000604053 631 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 AC006335.3-201ENST00000613408 292 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 MIR6127-201ENST00000614019 109 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 FAM157A-202ENST00000615155 405 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 TUG1_3.1-201ENST00000616187 237 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 LZTS1-204ENST00000616228 231 ntTSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 AC078938.1-201ENST00000620993 318 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 AC119674.1-212ENST00000641155 993 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 AP000542.3-201ENST00000623391 6114 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 FAM122C-211ENST00000623326 2064 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 GTF2H1-210ENST00000530496 1700 ntTSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 RNF152-201ENST00000312828 9501 ntAPPRIS P1 TSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 TANK-205ENST00000405852 2155 ntTSL 5 BASIC8.05□□□□□ -1.12
COL9A1P20849 NF1P1-201ENST00000604105 2645 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 MS4A6A-208ENST00000528851 1806 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 ZNF544-201ENST00000269829 3547 ntAPPRIS P3 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 GSK3A-202ENST00000398249 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 AP004289.2-201ENST00000444413 1457 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 MYO1A-201ENST00000300119 3621 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 COPB1-202ENST00000439561 3382 ntAPPRIS P1 TSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC8.05□□□□□ -1.12
COL9A1P20849 BTBD3-215ENST00000618918 4486 ntAPPRIS ALT1 TSL 4 BASIC8.05□□□□□ -1.12
COL9A1P20849 RAD51B-211ENST00000487861 1673 ntTSL 1 (best) BASIC8.05□□□□□ -1.12
COL9A1P20849 AC105760.1-201ENST00000244820 2231 ntTSL 2 BASIC8.05□□□□□ -1.12
COL9A1P20849 AP001528.3-201ENST00000624364 3249 ntBASIC8.05□□□□□ -1.12
COL9A1P20849 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 MRPL30-201ENST00000338148 2605 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 VCAN-208ENST00000512590 5923 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 STK32B-204ENST00000510398 3241 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 NECAP1-201ENST00000339754 2593 ntAPPRIS P2 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 RAB5B-210ENST00000553116 3322 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 MICAL3-219ENST00000585038 3323 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 PECAM1-203ENST00000563924 6831 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC8.04□□□□□ -1.12
COL9A1P20849 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
COL9A1P20849 SNORD35A-201ENST00000363389 86 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 RNU6-996P-201ENST00000365438 107 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 Y_RNA.527-201ENST00000384573 102 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
COL9A1P20849 RPL31P52-201ENST00000407532 367 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 MIR548K-201ENST00000408406 116 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AC074085.1-201ENST00000413598 418 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AL590806.1-201ENST00000415818 853 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC8.04□□□□□ -1.12
COL9A1P20849 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC8.04□□□□□ -1.12
COL9A1P20849 AC093151.1-201ENST00000427711 313 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 RPL23AP50-201ENST00000434149 455 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AL512882.1-201ENST00000436086 832 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC8.04□□□□□ -1.12
COL9A1P20849 AC007383.1-201ENST00000445875 636 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 DDX3P2-201ENST00000446138 111 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AC019080.2-201ENST00000453859 394 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 TRBV1-201ENST00000476502 284 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 OR4D12P-201ENST00000509361 911 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC8.04□□□□□ -1.12
COL9A1P20849 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC8.04□□□□□ -1.12
COL9A1P20849 AC126177.6-201ENST00000550420 1009 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AL121579.2-201ENST00000555466 590 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC8.04□□□□□ -1.12
COL9A1P20849 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC8.04□□□□□ -1.12
COL9A1P20849 AC005387.1-201ENST00000597837 352 ntTSL 3 BASIC8.04□□□□□ -1.12
COL9A1P20849 AL021918.1-201ENST00000603933 236 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AL592436.1-201ENST00000605135 558 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 AC245407.2-201ENST00000614199 451 ntBASIC8.04□□□□□ -1.12
COL9A1P20849 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC8.04□□□□□ -1.12
COL9A1P20849 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC8.04□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 158.3 ms