Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 IGLV3-24-201ENST00000517477 197 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 SMARCE1P3-201ENST00000553649 1231 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 HSPE1P2-201ENST00000554777 306 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 CKS1BP1-201ENST00000555221 240 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.92□□□□□ -1.62
LMX1BO60663 AL132657.2-201ENST00000564417 358 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 AC079148.1-201ENST00000565944 819 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.92□□□□□ -1.62
LMX1BO60663 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.92□□□□□ -1.62
LMX1BO60663 BNIP3P32-201ENST00000600015 554 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 RPL12P48-201ENST00000605620 304 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 RNA5SP439-201ENST00000617595 124 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
LMX1BO60663 AC095038.2-201ENST00000621464 1070 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 AP000943.4-201ENST00000622912 357 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 LINC00216-201ENST00000623548 1126 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LMX1BO60663 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
LMX1BO60663 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
LMX1BO60663 AL645568.2-201ENST00000432815 1337 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 PWAR1-201ENST00000624188 2414 ntBASIC4.92□□□□□ -1.62
LMX1BO60663 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
LMX1BO60663 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
LMX1BO60663 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC4.91□□□□□ -1.62
LMX1BO60663 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
LMX1BO60663 AL022311.1-201ENST00000623726 19416 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
LMX1BO60663 U3.7-201ENST00000363668 216 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
LMX1BO60663 U3.28-201ENST00000391249 210 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 HMGB1P20-201ENST00000402555 677 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AP000534.2-201ENST00000412729 568 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 RPS6P23-201ENST00000413224 722 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.91□□□□□ -1.62
LMX1BO60663 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC4.91□□□□□ -1.62
LMX1BO60663 AL354766.1-201ENST00000423396 542 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 SETP9-201ENST00000423837 832 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.91□□□□□ -1.62
LMX1BO60663 SPRYD7P1-201ENST00000443861 570 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC4.91□□□□□ -1.62
LMX1BO60663 RPS23P2-201ENST00000463671 415 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 RN7SL515P-201ENST00000463999 297 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AL133445.1-201ENST00000467051 452 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 AC108729.2-201ENST00000476543 840 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AC068587.2-201ENST00000478386 781 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.91□□□□□ -1.62
LMX1BO60663 AC073610.1-201ENST00000489971 396 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.91□□□□□ -1.62
LMX1BO60663 DUTP7-201ENST00000507982 486 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC4.91□□□□□ -1.62
LMX1BO60663 RN7SKP253-201ENST00000516424 309 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 Y_RNA.717-201ENST00000517106 92 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC4.91□□□□□ -1.62
LMX1BO60663 VTA1P2-201ENST00000520205 911 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 MTND2P32-201ENST00000521584 1038 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.91□□□□□ -1.62
LMX1BO60663 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC4.91□□□□□ -1.62
LMX1BO60663 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 IGBP1P1-201ENST00000554337 1009 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC4.91□□□□□ -1.62
LMX1BO60663 AGGF1P7-201ENST00000562369 913 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC4.91□□□□□ -1.62
LMX1BO60663 AC015802.2-201ENST00000589690 189 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AC023762.1-201ENST00000603280 584 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AC005156.1-201ENST00000613371 573 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AC007786.3-201ENST00000615154 596 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 AC074276.2-201ENST00000619891 348 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 AC007683.2-201ENST00000624681 714 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 AC099654.8-201ENST00000637757 681 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC4.91□□□□□ -1.62
LMX1BO60663 AC087565.3-203ENST00000641018 837 ntBASIC4.91□□□□□ -1.62
LMX1BO60663 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.91□□□□□ -1.62
LMX1BO60663 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
LMX1BO60663 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms