RNA–Protein interactions for RNA: ENST00000397838.7

CEP290-202, Transcript of centrosomal protein 290, humanhuman

TSL 5 BASIC

Gene CEP290, Length 2,421 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CEP290-202ENST00000397838 CHIC1Q5VXU3 224 aa21.06■□□□□ 0.96
CEP290-202ENST00000397838 AEBP2Q6ZN18 517 aaPredicted RBP20.88■□□□□ 0.93
CEP290-202ENST00000397838 PHF23Q9BUL5 403 aaPredicted RBP18.83■□□□□ 0.6
CEP290-202ENST00000397838 PLPPR3Q6T4P5 718 aa17.42■□□□□ 0.38
CEP290-202ENST00000397838 SENP3Q9H4L4 574 aaPredicted RBP17.24■□□□□ 0.35
CEP290-202ENST00000397838 ADRA2BP18089 450 aa16.64■□□□□ 0.25
CEP290-202ENST00000397838 EHMT2Q96KQ7 1210 aa16.47■□□□□ 0.23
CEP290-202ENST00000397838 KCNA4P22459 653 aa16.42■□□□□ 0.22
CEP290-202ENST00000397838 PPP6R1Q9UPN7 881 aa16.37■□□□□ 0.21
CEP290-202ENST00000397838 FOXD1Q16676 465 aa16.1■□□□□ 0.17
CEP290-202ENST00000397838 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
CEP290-202ENST00000397838 SLC4A1APQ9BWU0 796 aaKnown RBP15.65■□□□□ 0.1
CEP290-202ENST00000397838 PPP4R3CPQ6ZMV5 832 aa15.57■□□□□ 0.08
CEP290-202ENST00000397838 PIAS4Q8N2W9 510 aaPredicted RBP15.36■□□□□ 0.05
CEP290-202ENST00000397838 NPM3O75607 178 aaKnown RBP15.28■□□□□ 0.04
CEP290-202ENST00000397838 ZBTB22O15209 634 aa15.23■□□□□ 0.03
CEP290-202ENST00000397838 NCBP3Q53F19 620 aaKnown RBP15.21■□□□□ 0.02
CEP290-202ENST00000397838 CNKSR2Q8WXI2 1034 aa14.83□□□□□ -0.04
CEP290-202ENST00000397838 RTN4Q9NQC3 1192 aaKnown RBP14.67□□□□□ -0.06
CEP290-202ENST00000397838 FOXD4L1Q9NU39 408 aa14.65□□□□□ -0.06
CEP290-202ENST00000397838 SLC24A1O60721 1099 aa14.61□□□□□ -0.07
CEP290-202ENST00000397838 MAPK8IP2Q13387 824 aaPredicted RBP14.61□□□□□ -0.07
CEP290-202ENST00000397838 SCAF1Q9H7N4 1312 aaKnown RBP14.54□□□□□ -0.08
CEP290-202ENST00000397838 DNAJC5BQ9UF47 199 aa14.42□□□□□ -0.1
CEP290-202ENST00000397838 AMER1Q5JTC6 1135 aaPredicted RBP14.36□□□□□ -0.11
CEP290-202ENST00000397838 RNF216Q9NWF9 866 aaPredicted RBP14.31□□□□□ -0.12
CEP290-202ENST00000397838 SLC4A2P04920 1241 aa14.26□□□□□ -0.13
CEP290-202ENST00000397838 MSH5O43196 834 aa14.22□□□□□ -0.13
CEP290-202ENST00000397838 FKBP8Q14318 412 aa14.17□□□□□ -0.14
CEP290-202ENST00000397838 HOXD11P31277 338 aaPredicted RBP14.04□□□□□ -0.16
CEP290-202ENST00000397838 DMRT2Q9Y5R5 561 aa13.98□□□□□ -0.17
CEP290-202ENST00000397838 MYCNP04198 464 aaPredicted RBP13.93□□□□□ -0.18
CEP290-202ENST00000397838 ATXN8OSP0DMR3 200 aa13.91□□□□□ -0.18
CEP290-202ENST00000397838 ATF5Q9Y2D1 282 aaPredicted RBP13.81□□□□□ -0.2
CEP290-202ENST00000397838 DCAF8L1A6NGE4 600 aa13.4□□□□□ -0.26
CEP290-202ENST00000397838 U3KPZ7 1027 aaPredicted RBP13.39□□□□□ -0.27
CEP290-202ENST00000397838 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.38□□□□□ -0.27
CEP290-202ENST00000397838 PLCB2Q00722 1185 aa13.34□□□□□ -0.27
CEP290-202ENST00000397838 SAMD1Q6SPF0 538 aaPredicted RBP13.28□□□□□ -0.28
CEP290-202ENST00000397838 ZNF219Q9P2Y4 722 aaPredicted RBP13.23□□□□□ -0.29
CEP290-202ENST00000397838 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.2□□□□□ -0.3
CEP290-202ENST00000397838 HNRNPUL2Q1KMD3 747 aaKnown RBP13.2□□□□□ -0.3
CEP290-202ENST00000397838 PRKCSHP14314 528 aaPredicted RBP13.19□□□□□ -0.3
CEP290-202ENST00000397838 MKRN4PQ13434 485 aaPredicted RBP13.19□□□□□ -0.3
CEP290-202ENST00000397838 SPDYE4A6NLX3 237 aa13.18□□□□□ -0.3
CEP290-202ENST00000397838 HAP1P54257 671 aaPredicted RBP13.17□□□□□ -0.3
CEP290-202ENST00000397838 IFNLR1Q8IU57 520 aaPredicted RBP13.14□□□□□ -0.31
CEP290-202ENST00000397838 FBXO3Q9UK99 471 aa13.14□□□□□ -0.31
CEP290-202ENST00000397838 VASPP50552 380 aaPredicted RBP13.13□□□□□ -0.31
CEP290-202ENST00000397838 DCAF8L2P0C7V8 631 aa13.11□□□□□ -0.31
CEP290-202ENST00000397838 PROM2Q8N271 834 aa13.1□□□□□ -0.31
CEP290-202ENST00000397838 PKD2Q13563 968 aa13.06□□□□□ -0.32
CEP290-202ENST00000397838 BCANQ96GW7 911 aa12.95□□□□□ -0.34
CEP290-202ENST00000397838 TAOK2Q9UL54 1235 aa12.95□□□□□ -0.34
CEP290-202ENST00000397838 KDM2AQ9Y2K7 1162 aa12.91□□□□□ -0.34
CEP290-202ENST00000397838 FBLN2P98095 1184 aa12.89□□□□□ -0.35
CEP290-202ENST00000397838 NPM1P06748 294 aaKnown RBP eCLIP12.86□□□□□ -0.35
CEP290-202ENST00000397838 VSIG10Q8N0Z9 540 aa12.84□□□□□ -0.35
CEP290-202ENST00000397838 SPINK5Q9NQ38 1064 aaPredicted RBP12.83□□□□□ -0.35
CEP290-202ENST00000397838 TRHP20396 242 aaPredicted RBP12.79□□□□□ -0.36
CEP290-202ENST00000397838 POLA2Q14181 598 aa12.79□□□□□ -0.36
CEP290-202ENST00000397838 TPRNQ4KMQ1 711 aa12.79□□□□□ -0.36
CEP290-202ENST00000397838 PAXIP1Q6ZW49 1069 aaPredicted RBP12.74□□□□□ -0.37
CEP290-202ENST00000397838 APLP2Q06481 763 aa12.73□□□□□ -0.37
CEP290-202ENST00000397838 CFAP44Q96MT7 982 aa12.72□□□□□ -0.37
CEP290-202ENST00000397838 ECM2O94769 699 aaPredicted RBP12.69□□□□□ -0.38
CEP290-202ENST00000397838 BBXQ8WY36 941 aaPredicted RBP12.68□□□□□ -0.38
CEP290-202ENST00000397838 RGL2O15211 777 aa12.67□□□□□ -0.38
CEP290-202ENST00000397838 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.64□□□□□ -0.39
CEP290-202ENST00000397838 KLHL34Q8N239 644 aa12.63□□□□□ -0.39
CEP290-202ENST00000397838 TSHZ2Q9NRE2 1034 aa12.63□□□□□ -0.39
CEP290-202ENST00000397838 SPOCK2Q92563 424 aa12.62□□□□□ -0.39
CEP290-202ENST00000397838 CAPN15O75808 1086 aa12.58□□□□□ -0.4
CEP290-202ENST00000397838 ABCB7O75027 752 aa12.56□□□□□ -0.4
CEP290-202ENST00000397838 SPRYD3Q8NCJ5 442 aa12.49□□□□□ -0.41
CEP290-202ENST00000397838 CHGAP10645 457 aaKnown RBP12.45□□□□□ -0.42
CEP290-202ENST00000397838 PLCD3Q8N3E9 789 aa12.45□□□□□ -0.42
CEP290-202ENST00000397838 RNF39Q9H2S5 420 aa12.43□□□□□ -0.42
CEP290-202ENST00000397838 ZNF692Q9BU19 519 aaPredicted RBP12.4□□□□□ -0.42
CEP290-202ENST00000397838 OSCARQ8IYS5 282 aa12.38□□□□□ -0.43
CEP290-202ENST00000397838 MIER1Q8N108 512 aa12.37□□□□□ -0.43
CEP290-202ENST00000397838 CIZ1Q9ULV3 898 aaPredicted RBP12.36□□□□□ -0.43
CEP290-202ENST00000397838 ZBTB12Q9Y330 459 aaPredicted RBP12.35□□□□□ -0.43
CEP290-202ENST00000397838 STAG3Q9UJ98 1225 aa12.34□□□□□ -0.43
CEP290-202ENST00000397838 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
CEP290-202ENST00000397838 DNAJC5Q9H3Z4 198 aa12.33□□□□□ -0.44
CEP290-202ENST00000397838 TIMELESSQ9UNS1 1208 aa12.32□□□□□ -0.44
CEP290-202ENST00000397838 SSUH2Q9Y2M2 353 aa12.32□□□□□ -0.44
CEP290-202ENST00000397838 RNF25Q96BH1 459 aaPredicted RBP12.3□□□□□ -0.44
CEP290-202ENST00000397838 NBR1Q14596 966 aa12.25□□□□□ -0.45
CEP290-202ENST00000397838 NKX1-1Q15270 411 aaPredicted RBP12.24□□□□□ -0.45
CEP290-202ENST00000397838 TULP1O00294 542 aaPredicted RBP12.22□□□□□ -0.45
CEP290-202ENST00000397838 HS6ST3Q8IZP7 471 aa12.22□□□□□ -0.45
CEP290-202ENST00000397838 SPDYE2BA6NHP3 402 aa12.22□□□□□ -0.45
CEP290-202ENST00000397838 SPDYE6P0CI01 402 aa12.22□□□□□ -0.45
CEP290-202ENST00000397838 SPDYE2Q495Y8 402 aa12.22□□□□□ -0.45
CEP290-202ENST00000397838 C1QBPQ07021 282 aaKnown RBP12.19□□□□□ -0.46
CEP290-202ENST00000397838 DSG3P32926 999 aa12.19□□□□□ -0.46
CEP290-202ENST00000397838 GTPBP6O43824 516 aaPredicted RBP12.11□□□□□ -0.47
CEP290-202ENST00000397838 GTF3C3Q9Y5Q9 886 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms