Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDD3Q9Y3P4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 HLA-G-202ENST00000376815 851 ntBASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 HLA-G-203ENST00000376818 1127 ntBASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 MIPEPP3-201ENST00000412105 444 ntBASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDD3Q9Y3P4 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 NCF1B-203ENST00000435988 1254 ntBASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 AC023632.3-201ENST00000521633 145 ntBASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RHBDD3Q9Y3P4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 GPX1P1-201ENST00000388829 606 ntBASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.1■□□□□ 0.33
RHBDD3Q9Y3P4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDD3Q9Y3P4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RHBDD3Q9Y3P4 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms