Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC008403.3-201ENST00000598924 454 ntBASIC18.92■□□□□ 0.62
VPS4AQ9UN37 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS4AQ9UN37 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS4AQ9UN37 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 Z99916.2-201ENST00000604037 246 ntBASIC18.9■□□□□ 0.62
VPS4AQ9UN37 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VPS4AQ9UN37 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS4AQ9UN37 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS4AQ9UN37 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS4AQ9UN37 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
VPS4AQ9UN37 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms