Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TREX1Q9NSU2 BX323043.1-201ENST00000641006 1765 ntBASIC19.55■□□□□ 0.72
TREX1Q9NSU2 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 AC018445.3-201ENST00000624177 1945 ntBASIC19.54■□□□□ 0.72
TREX1Q9NSU2 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.54■□□□□ 0.72
TREX1Q9NSU2 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
TREX1Q9NSU2 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 AC008403.3-201ENST00000598924 454 ntBASIC19.53■□□□□ 0.72
TREX1Q9NSU2 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.53■□□□□ 0.72
TREX1Q9NSU2 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 ZNF815P-204ENST00000434898 1737 ntBASIC19.52■□□□□ 0.72
TREX1Q9NSU2 POM121L13P-201ENST00000422362 380 ntBASIC19.52■□□□□ 0.72
TREX1Q9NSU2 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TREX1Q9NSU2 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
TREX1Q9NSU2 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.71
TREX1Q9NSU2 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 KRT18P16-201ENST00000510337 1294 ntBASIC19.51■□□□□ 0.71
TREX1Q9NSU2 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TREX1Q9NSU2 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms