Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSU72Q9NP77 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.45■□□□□ 0.7
SSU72Q9NP77 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSU72Q9NP77 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.45■□□□□ 0.7
SSU72Q9NP77 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSU72Q9NP77 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSU72Q9NP77 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SSU72Q9NP77 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.45■□□□□ 0.7
SSU72Q9NP77 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.45■□□□□ 0.7
SSU72Q9NP77 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SSU72Q9NP77 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.45■□□□□ 0.7
SSU72Q9NP77 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 AC013268.1-206ENST00000638368 961 ntBASIC19.44■□□□□ 0.7
SSU72Q9NP77 AC112229.1-201ENST00000639295 961 ntBASIC19.44■□□□□ 0.7
SSU72Q9NP77 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 AC007613.1-201ENST00000572811 2597 ntBASIC19.44■□□□□ 0.7
SSU72Q9NP77 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 AC104581.1-202ENST00000635932 2618 ntBASIC19.44■□□□□ 0.7
SSU72Q9NP77 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SSU72Q9NP77 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.44■□□□□ 0.7
SSU72Q9NP77 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 KRT18P68-201ENST00000392293 1000 ntBASIC19.43■□□□□ 0.7
SSU72Q9NP77 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 RARRES2P4-201ENST00000514074 484 ntBASIC19.43■□□□□ 0.7
SSU72Q9NP77 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.43■□□□□ 0.7
SSU72Q9NP77 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.43■□□□□ 0.7
SSU72Q9NP77 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SSU72Q9NP77 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 KRT18P61-201ENST00000585825 1298 ntBASIC19.42■□□□□ 0.7
SSU72Q9NP77 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SSU72Q9NP77 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SSU72Q9NP77 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SSU72Q9NP77 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSU72Q9NP77 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.41■□□□□ 0.7
SSU72Q9NP77 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSU72Q9NP77 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSU72Q9NP77 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SSU72Q9NP77 WIZP1-201ENST00000531444 2299 ntBASIC19.41■□□□□ 0.7
SSU72Q9NP77 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSU72Q9NP77 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.41■□□□□ 0.7
SSU72Q9NP77 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.41■□□□□ 0.7
SSU72Q9NP77 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
SSU72Q9NP77 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SSU72Q9NP77 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SSU72Q9NP77 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SSU72Q9NP77 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.41■□□□□ 0.7
SSU72Q9NP77 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SSU72Q9NP77 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms