Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.29■□□□□ 0.52
VCX3AQ9NNX9 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
VCX3AQ9NNX9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 RARRES2P2-201ENST00000394842 485 ntBASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.28■□□□□ 0.52
VCX3AQ9NNX9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 CROCCP1-201ENST00000426910 5675 ntBASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 AC006455.2-201ENST00000429931 906 ntBASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VCX3AQ9NNX9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
VCX3AQ9NNX9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VCX3AQ9NNX9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VCX3AQ9NNX9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
VCX3AQ9NNX9 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
VCX3AQ9NNX9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.27■□□□□ 0.51
VCX3AQ9NNX9 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 NFIC-211ENST00000641145 8399 ntBASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
VCX3AQ9NNX9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VCX3AQ9NNX9 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms