Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC17.21■□□□□ 0.35
LIME1Q9H400 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
LIME1Q9H400 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIME1Q9H400 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.21■□□□□ 0.34
LIME1Q9H400 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LIME1Q9H400 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIME1Q9H400 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
LIME1Q9H400 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.2■□□□□ 0.34
LIME1Q9H400 TERF1P1-201ENST00000311003 1181 ntBASIC17.2■□□□□ 0.34
LIME1Q9H400 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIME1Q9H400 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.2■□□□□ 0.34
LIME1Q9H400 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.2■□□□□ 0.34
LIME1Q9H400 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.2■□□□□ 0.34
LIME1Q9H400 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
LIME1Q9H400 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.2■□□□□ 0.34
LIME1Q9H400 NTF6B-201ENST00000591913 560 ntBASIC17.2■□□□□ 0.34
LIME1Q9H400 AL031963.3-201ENST00000606441 850 ntBASIC17.2■□□□□ 0.34
LIME1Q9H400 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.2■□□□□ 0.34
LIME1Q9H400 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.2■□□□□ 0.34
LIME1Q9H400 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.2■□□□□ 0.34
LIME1Q9H400 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LIME1Q9H400 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.19■□□□□ 0.34
LIME1Q9H400 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.19■□□□□ 0.34
LIME1Q9H400 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.19■□□□□ 0.34
LIME1Q9H400 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.19■□□□□ 0.34
LIME1Q9H400 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.19■□□□□ 0.34
LIME1Q9H400 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.19■□□□□ 0.34
LIME1Q9H400 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
LIME1Q9H400 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC17.18■□□□□ 0.34
LIME1Q9H400 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
LIME1Q9H400 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
LIME1Q9H400 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.18■□□□□ 0.34
LIME1Q9H400 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.18■□□□□ 0.34
LIME1Q9H400 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
LIME1Q9H400 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.18■□□□□ 0.34
LIME1Q9H400 AL137013.1-201ENST00000432946 1228 ntBASIC17.18■□□□□ 0.34
LIME1Q9H400 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.18■□□□□ 0.34
LIME1Q9H400 AC104076.2-201ENST00000448912 469 ntBASIC17.18■□□□□ 0.34
LIME1Q9H400 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.18■□□□□ 0.34
LIME1Q9H400 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.18■□□□□ 0.34
LIME1Q9H400 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.18■□□□□ 0.34
LIME1Q9H400 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.18■□□□□ 0.34
LIME1Q9H400 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.18■□□□□ 0.34
LIME1Q9H400 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.18■□□□□ 0.34
LIME1Q9H400 AC010947.1-201ENST00000623454 693 ntBASIC17.18■□□□□ 0.34
LIME1Q9H400 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 RNF165-205ENST00000588679 2904 ntBASIC17.18■□□□□ 0.34
LIME1Q9H400 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC17.18■□□□□ 0.34
LIME1Q9H400 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
LIME1Q9H400 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
LIME1Q9H400 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIME1Q9H400 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LIME1Q9H400 AC011484.1-201ENST00000377652 1995 ntBASIC17.17■□□□□ 0.34
LIME1Q9H400 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIME1Q9H400 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.17■□□□□ 0.34
LIME1Q9H400 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.17■□□□□ 0.34
LIME1Q9H400 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.17■□□□□ 0.34
LIME1Q9H400 NAPSB-206ENST00000562112 1266 ntBASIC17.17■□□□□ 0.34
LIME1Q9H400 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.17■□□□□ 0.34
LIME1Q9H400 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LIME1Q9H400 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.17■□□□□ 0.34
LIME1Q9H400 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LIME1Q9H400 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms