Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM43Q96BQ3 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM43Q96BQ3 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
TRIM43Q96BQ3 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
TRIM43Q96BQ3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM43Q96BQ3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.35■■□□□ 1.01
TRIM43Q96BQ3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM43Q96BQ3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
TRIM43Q96BQ3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 AC092119.3-201ENST00000612618 583 ntBASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 LINC01311-201ENST00000565162 1445 ntBASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TRIM43Q96BQ3 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.33■■□□□ 1.01
TRIM43Q96BQ3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM43Q96BQ3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TRIM43Q96BQ3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1
TRIM43Q96BQ3 TMEM179-206ENST00000616017 1645 ntBASIC21.33■■□□□ 1
TRIM43Q96BQ3 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM43Q96BQ3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM43Q96BQ3 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM43Q96BQ3 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 STARP1-201ENST00000397973 869 ntBASIC21.32■■□□□ 1
TRIM43Q96BQ3 SPDYE13P-201ENST00000445314 798 ntBASIC21.32■■□□□ 1
TRIM43Q96BQ3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 GCSHP2-201ENST00000560971 527 ntBASIC21.32■■□□□ 1
TRIM43Q96BQ3 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM43Q96BQ3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM43Q96BQ3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.32■■□□□ 1
TRIM43Q96BQ3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM43Q96BQ3 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRIM43Q96BQ3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 AL845331.1-201ENST00000424978 1190 ntBASIC21.31■■□□□ 1
TRIM43Q96BQ3 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.31■■□□□ 1
TRIM43Q96BQ3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRIM43Q96BQ3 FP700111.2-201ENST00000619190 1892 ntBASIC21.3■■□□□ 1
TRIM43Q96BQ3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.3■■□□□ 1
TRIM43Q96BQ3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
TRIM43Q96BQ3 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.3■■□□□ 1
TRIM43Q96BQ3 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms