Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 FOSL1P1-201ENST00000511041 816 ntBASIC20.01■□□□□ 0.79
TTC28Q96AY4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 CYMP-203ENST00000474680 1263 ntBASIC20.01■□□□□ 0.79
TTC28Q96AY4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 AC112497.1-201ENST00000624824 639 ntBASIC20.01■□□□□ 0.79
TTC28Q96AY4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
TTC28Q96AY4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.01■□□□□ 0.79
TTC28Q96AY4 KRT8P36-201ENST00000489121 1440 ntBASIC20■□□□□ 0.79
TTC28Q96AY4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20■□□□□ 0.79
TTC28Q96AY4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20■□□□□ 0.79
TTC28Q96AY4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20■□□□□ 0.79
TTC28Q96AY4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20■□□□□ 0.79
TTC28Q96AY4 AP003041.3-201ENST00000527151 707 ntBASIC20■□□□□ 0.79
TTC28Q96AY4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20■□□□□ 0.79
TTC28Q96AY4 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20■□□□□ 0.79
TTC28Q96AY4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
TTC28Q96AY4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20■□□□□ 0.79
TTC28Q96AY4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
TTC28Q96AY4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
TTC28Q96AY4 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TTC28Q96AY4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20■□□□□ 0.79
TTC28Q96AY4 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TTC28Q96AY4 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TTC28Q96AY4 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 AP001005.1-201ENST00000571755 1248 ntBASIC19.99■□□□□ 0.79
TTC28Q96AY4 AC116351.2-201ENST00000606540 1585 ntBASIC19.99■□□□□ 0.79
TTC28Q96AY4 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TTC28Q96AY4 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TTC28Q96AY4 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TTC28Q96AY4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TTC28Q96AY4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.99■□□□□ 0.79
TTC28Q96AY4 AC020928.2-201ENST00000588717 2197 ntBASIC19.99■□□□□ 0.79
TTC28Q96AY4 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TTC28Q96AY4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TTC28Q96AY4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TTC28Q96AY4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.98■□□□□ 0.79
TTC28Q96AY4 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TTC28Q96AY4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
TTC28Q96AY4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.98■□□□□ 0.79
TTC28Q96AY4 AC010327.4-202ENST00000591484 748 ntBASIC19.98■□□□□ 0.79
TTC28Q96AY4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.98■□□□□ 0.79
TTC28Q96AY4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.98■□□□□ 0.79
TTC28Q96AY4 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TTC28Q96AY4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TTC28Q96AY4 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.98■□□□□ 0.79
TTC28Q96AY4 TOB2P1-201ENST00000469761 992 ntBASIC19.98■□□□□ 0.79
TTC28Q96AY4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
TTC28Q96AY4 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TTC28Q96AY4 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 AC073648.2-201ENST00000510116 352 ntBASIC19.97■□□□□ 0.79
TTC28Q96AY4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms