Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 BX276092.2-201ENST00000417668 665 ntBASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 AC116351.2-201ENST00000606540 1585 ntBASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ATG4AQ8WYN0 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
ATG4AQ8WYN0 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 MIR663A-201ENST00000385250 93 ntBASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ATG4AQ8WYN0 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
ATG4AQ8WYN0 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ATG4AQ8WYN0 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ATG4AQ8WYN0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 LINC01465-201ENST00000408887 1940 ntBASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 AF201337.1-201ENST00000520239 748 ntBASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.26■□□□□ 0.83
ATG4AQ8WYN0 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.25■□□□□ 0.83
ATG4AQ8WYN0 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms