Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 PCDHAC2-203ENST00000615316 3011 ntBASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 KRT18P16-201ENST00000510337 1294 ntBASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 AL445675.2-201ENST00000620291 557 ntBASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 AL031985.4-201ENST00000642138 673 ntBASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHKBP1Q8TBC3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 MESTP1-201ENST00000404287 994 ntBASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 AC005363.2-201ENST00000618631 242 ntBASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 AC010947.1-201ENST00000623454 693 ntBASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 LINC01568-207ENST00000641790 1380 ntBASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.56■□□□□ 0.88
SHKBP1Q8TBC3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 NAPSB-206ENST00000562112 1266 ntBASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.55■□□□□ 0.88
SHKBP1Q8TBC3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 PHGDH-210ENST00000641115 1638 ntBASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 SMG8-203ENST00000578922 2178 ntBASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 TUBB8P6-201ENST00000436895 1288 ntBASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 AC026271.3-201ENST00000571884 352 ntBASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 AC092865.7-201ENST00000641832 219 ntBASIC20.54■□□□□ 0.88
SHKBP1Q8TBC3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms