Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC16.83■□□□□ 0.29
USF3Q68DE3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
USF3Q68DE3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.83■□□□□ 0.28
USF3Q68DE3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.83■□□□□ 0.28
USF3Q68DE3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USF3Q68DE3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USF3Q68DE3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
USF3Q68DE3 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.83■□□□□ 0.28
USF3Q68DE3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.83■□□□□ 0.28
USF3Q68DE3 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.83■□□□□ 0.28
USF3Q68DE3 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.83■□□□□ 0.28
USF3Q68DE3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.83■□□□□ 0.28
USF3Q68DE3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.83■□□□□ 0.28
USF3Q68DE3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
USF3Q68DE3 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
USF3Q68DE3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC16.83■□□□□ 0.28
USF3Q68DE3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USF3Q68DE3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.82■□□□□ 0.28
USF3Q68DE3 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.82■□□□□ 0.28
USF3Q68DE3 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.82■□□□□ 0.28
USF3Q68DE3 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
USF3Q68DE3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC16.82■□□□□ 0.28
USF3Q68DE3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.82■□□□□ 0.28
USF3Q68DE3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.82■□□□□ 0.28
USF3Q68DE3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.82■□□□□ 0.28
USF3Q68DE3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.82■□□□□ 0.28
USF3Q68DE3 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
USF3Q68DE3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC16.82■□□□□ 0.28
USF3Q68DE3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
USF3Q68DE3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USF3Q68DE3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.82■□□□□ 0.28
USF3Q68DE3 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
USF3Q68DE3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.81■□□□□ 0.28
USF3Q68DE3 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.81■□□□□ 0.28
USF3Q68DE3 MIR1238-201ENST00000408483 83 ntBASIC16.81■□□□□ 0.28
USF3Q68DE3 FITM1-202ENST00000559294 800 ntBASIC16.81■□□□□ 0.28
USF3Q68DE3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 KRT16P1-201ENST00000399124 1418 ntBASIC16.81■□□□□ 0.28
USF3Q68DE3 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 AC121338.2-201ENST00000622535 1744 ntBASIC16.81■□□□□ 0.28
USF3Q68DE3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.81■□□□□ 0.28
USF3Q68DE3 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
USF3Q68DE3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
USF3Q68DE3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
USF3Q68DE3 CR392000.1-201ENST00000624770 1228 ntBASIC16.81■□□□□ 0.28
USF3Q68DE3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.81■□□□□ 0.28
USF3Q68DE3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
USF3Q68DE3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
USF3Q68DE3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
USF3Q68DE3 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.8■□□□□ 0.28
USF3Q68DE3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 AC073508.3-201ENST00000619697 1419 ntBASIC16.8■□□□□ 0.28
USF3Q68DE3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
USF3Q68DE3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.8■□□□□ 0.28
USF3Q68DE3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.8■□□□□ 0.28
USF3Q68DE3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.8■□□□□ 0.28
USF3Q68DE3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC16.8■□□□□ 0.28
USF3Q68DE3 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.8■□□□□ 0.28
USF3Q68DE3 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
USF3Q68DE3 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.8■□□□□ 0.28
USF3Q68DE3 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.8■□□□□ 0.28
USF3Q68DE3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USF3Q68DE3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms