Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.53■■□□□ 1.04
CCDC40Q4G0X9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 AC005332.7-201ENST00000614046 2005 ntBASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 AL138781.1-201ENST00000566567 1274 ntBASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 AL109923.1-201ENST00000618799 583 ntBASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC40Q4G0X9 AC120498.9-201ENST00000339021 3867 ntBASIC21.52■■□□□ 1.03
CCDC40Q4G0X9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC40Q4G0X9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CCDC40Q4G0X9 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 AC098934.4-201ENST00000564127 592 ntBASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 MYC-209ENST00000641252 345 ntBASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 AC092368.3-202ENST00000574180 1591 ntBASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
CCDC40Q4G0X9 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 AC124283.5-201ENST00000624661 1809 ntBASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CCDC40Q4G0X9 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CCDC40Q4G0X9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 TFP1-202ENST00000475455 1573 ntBASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.48■■□□□ 1.03
CCDC40Q4G0X9 RPS2P52-201ENST00000469610 820 ntBASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms