Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 COX10-202ENST00000429152 875 ntTSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 PMS2P1-201ENST00000431037 1228 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC12.2□□□□□ -0.46
HSPG2P98160 TPSP2-201ENST00000561760 610 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 ABR-217ENST00000572441 563 ntTSL 4 BASIC12.2□□□□□ -0.46
HSPG2P98160 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 HLA-A-201ENST00000376802 1334 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
HSPG2P98160 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC12.2□□□□□ -0.46
HSPG2P98160 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 FOSL1P1-201ENST00000511041 816 ntBASIC12.2□□□□□ -0.46
HSPG2P98160 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC12.2□□□□□ -0.46
HSPG2P98160 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
HSPG2P98160 TFP1-202ENST00000475455 1573 ntBASIC12.19□□□□□ -0.46
HSPG2P98160 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HSPG2P98160 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HSPG2P98160 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
HSPG2P98160 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC12.19□□□□□ -0.46
HSPG2P98160 MIR4674-201ENST00000582457 87 ntBASIC12.19□□□□□ -0.46
HSPG2P98160 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC12.19□□□□□ -0.46
HSPG2P98160 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
HSPG2P98160 AC243591.1-201ENST00000452967 1364 ntBASIC12.19□□□□□ -0.46
HSPG2P98160 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HSPG2P98160 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
HSPG2P98160 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
HSPG2P98160 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
HSPG2P98160 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HSPG2P98160 TERT-206ENST00000508104 2486 ntTSL 5 BASIC12.19□□□□□ -0.46
HSPG2P98160 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.19□□□□□ -0.46
HSPG2P98160 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
HSPG2P98160 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC12.19□□□□□ -0.46
HSPG2P98160 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC12.19□□□□□ -0.46
HSPG2P98160 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC12.19□□□□□ -0.46
HSPG2P98160 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC12.19□□□□□ -0.46
HSPG2P98160 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HSPG2P98160 MFF-203ENST00000349901 1716 ntTSL 2 BASIC12.19□□□□□ -0.46
HSPG2P98160 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC12.19□□□□□ -0.46
HSPG2P98160 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
HSPG2P98160 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
HSPG2P98160 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HSPG2P98160 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
HSPG2P98160 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC12.19□□□□□ -0.46
HSPG2P98160 AC092865.5-201ENST00000545435 363 ntBASIC12.19□□□□□ -0.46
HSPG2P98160 AC091304.2-201ENST00000564639 760 ntBASIC12.19□□□□□ -0.46
HSPG2P98160 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
HSPG2P98160 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
HSPG2P98160 FAM220CP-201ENST00000395253 831 ntBASIC12.18□□□□□ -0.46
HSPG2P98160 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC12.18□□□□□ -0.46
HSPG2P98160 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
HSPG2P98160 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
HSPG2P98160 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 C9orf163-202ENST00000624034 2573 ntBASIC12.18□□□□□ -0.46
HSPG2P98160 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 DFFB-203ENST00000341385 572 ntTSL 5 BASIC12.18□□□□□ -0.46
HSPG2P98160 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC12.18□□□□□ -0.46
HSPG2P98160 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC12.18□□□□□ -0.46
HSPG2P98160 MIR2861-201ENST00000636310 90 ntBASIC12.18□□□□□ -0.46
HSPG2P98160 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
HSPG2P98160 AC116351.2-201ENST00000606540 1585 ntBASIC12.18□□□□□ -0.46
HSPG2P98160 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC12.18□□□□□ -0.46
HSPG2P98160 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 H19-201ENST00000411754 1788 ntTSL 5 BASIC12.18□□□□□ -0.46
HSPG2P98160 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC12.18□□□□□ -0.46
HSPG2P98160 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
HSPG2P98160 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 AP005901.3-202ENST00000581653 237 ntBASIC12.18□□□□□ -0.46
HSPG2P98160 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC12.18□□□□□ -0.46
HSPG2P98160 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC12.18□□□□□ -0.46
HSPG2P98160 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC12.18□□□□□ -0.46
HSPG2P98160 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 DYM-203ENST00000442713 2147 ntTSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
HSPG2P98160 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
HSPG2P98160 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC12.18□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms