Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VCPP55072 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 KRT8P9-201ENST00000558927 1449 ntBASIC20.96■□□□□ 0.95
VCPP55072 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
VCPP55072 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.96■□□□□ 0.95
VCPP55072 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.96■□□□□ 0.95
VCPP55072 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.96■□□□□ 0.95
VCPP55072 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.96■□□□□ 0.95
VCPP55072 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.96■□□□□ 0.95
VCPP55072 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
VCPP55072 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
VCPP55072 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VCPP55072 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.96■□□□□ 0.95
VCPP55072 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
VCPP55072 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.95■□□□□ 0.94
VCPP55072 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 AC113347.1-201ENST00000413321 391 ntBASIC20.95■□□□□ 0.94
VCPP55072 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.95■□□□□ 0.94
VCPP55072 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.95■□□□□ 0.94
VCPP55072 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.95■□□□□ 0.94
VCPP55072 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.95■□□□□ 0.94
VCPP55072 AL121894.2-201ENST00000602977 491 ntBASIC20.95■□□□□ 0.94
VCPP55072 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.95■□□□□ 0.94
VCPP55072 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
VCPP55072 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
VCPP55072 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
VCPP55072 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VCPP55072 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
VCPP55072 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.95■□□□□ 0.94
VCPP55072 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VCPP55072 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
VCPP55072 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VCPP55072 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.94■□□□□ 0.94
VCPP55072 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.94■□□□□ 0.94
VCPP55072 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
VCPP55072 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC20.94■□□□□ 0.94
VCPP55072 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.94■□□□□ 0.94
VCPP55072 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.94■□□□□ 0.94
VCPP55072 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
VCPP55072 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VCPP55072 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.94■□□□□ 0.94
VCPP55072 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.94■□□□□ 0.94
VCPP55072 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.93■□□□□ 0.94
VCPP55072 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
VCPP55072 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.93■□□□□ 0.94
VCPP55072 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.93■□□□□ 0.94
VCPP55072 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.93■□□□□ 0.94
VCPP55072 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.93■□□□□ 0.94
VCPP55072 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
VCPP55072 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VCPP55072 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.93■□□□□ 0.94
VCPP55072 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VCPP55072 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.92■□□□□ 0.94
VCPP55072 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VCPP55072 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.92■□□□□ 0.94
VCPP55072 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.92■□□□□ 0.94
VCPP55072 TPM4P1-201ENST00000436100 807 ntBASIC20.92■□□□□ 0.94
VCPP55072 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms