Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
CIITAP33076 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC22.13■■□□□ 1.13
CIITAP33076 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC22.13■■□□□ 1.13
CIITAP33076 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.12■■□□□ 1.13
CIITAP33076 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CIITAP33076 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CIITAP33076 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
CIITAP33076 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CIITAP33076 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC22.12■■□□□ 1.13
CIITAP33076 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
CIITAP33076 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
CIITAP33076 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
CIITAP33076 AP002982.1-201ENST00000492365 877 ntBASIC22.12■■□□□ 1.13
CIITAP33076 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.12■■□□□ 1.13
CIITAP33076 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.12■■□□□ 1.13
CIITAP33076 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CIITAP33076 GRAP-204ENST00000573099 846 ntTSL 3 BASIC22.12■■□□□ 1.13
CIITAP33076 AL445675.2-201ENST00000620291 557 ntBASIC22.12■■□□□ 1.13
CIITAP33076 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.12■■□□□ 1.13
CIITAP33076 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CIITAP33076 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CIITAP33076 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CIITAP33076 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC22.11■■□□□ 1.13
CIITAP33076 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CIITAP33076 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CIITAP33076 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.11■■□□□ 1.13
CIITAP33076 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.11■■□□□ 1.13
CIITAP33076 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC22.11■■□□□ 1.13
CIITAP33076 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.11■■□□□ 1.13
CIITAP33076 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC22.11■■□□□ 1.13
CIITAP33076 MIR4497-201ENST00000583208 89 ntBASIC22.11■■□□□ 1.13
CIITAP33076 HLA-A-209ENST00000638375 975 ntBASIC22.11■■□□□ 1.13
CIITAP33076 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC22.11■■□□□ 1.13
CIITAP33076 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC22.11■■□□□ 1.13
CIITAP33076 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC22.11■■□□□ 1.13
CIITAP33076 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC22.11■■□□□ 1.13
CIITAP33076 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.11■■□□□ 1.13
CIITAP33076 MED17-221ENST00000639724 2317 ntTSL 5 BASIC22.11■■□□□ 1.13
CIITAP33076 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CIITAP33076 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC22.1■■□□□ 1.13
CIITAP33076 SRI-203ENST00000419179 1307 ntTSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
CIITAP33076 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC22.1■■□□□ 1.13
CIITAP33076 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.1■■□□□ 1.13
CIITAP33076 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.1■■□□□ 1.13
CIITAP33076 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.1■■□□□ 1.13
CIITAP33076 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CIITAP33076 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
CIITAP33076 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 AC125437.2-201ENST00000625180 2167 ntBASIC22.09■■□□□ 1.13
CIITAP33076 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.09■■□□□ 1.13
CIITAP33076 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC22.09■■□□□ 1.13
CIITAP33076 CD177P1-201ENST00000606252 935 ntBASIC22.09■■□□□ 1.13
CIITAP33076 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CIITAP33076 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC22.09■■□□□ 1.13
CIITAP33076 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC22.09■■□□□ 1.13
CIITAP33076 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
CIITAP33076 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
CIITAP33076 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CIITAP33076 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.08■■□□□ 1.13
CIITAP33076 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms