Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 RNU6-244P-201ENST00000391028 104 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 AL583835.1-201ENST00000399570 407 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 RN7SKP127-201ENST00000410443 354 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 RNU6-370P-201ENST00000411008 104 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC8.09□□□□□ -1.11
COL9A1P20849 LINC00350-201ENST00000438640 422 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC092809.1-201ENST00000441469 474 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC8.09□□□□□ -1.11
COL9A1P20849 AL136454.1-201ENST00000443181 466 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 CXCR2P1-202ENST00000443392 1074 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 ELOCP24-201ENST00000456370 334 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC8.09□□□□□ -1.11
COL9A1P20849 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC8.09□□□□□ -1.11
COL9A1P20849 MTCYBP40-201ENST00000509390 1135 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 SNORA25.10-201ENST00000515926 124 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 Y_RNA.668-201ENST00000516233 93 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 IGLVIV-64-201ENST00000518581 301 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 IGKV1OR22-1-201ENST00000521497 360 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 ST13P6-201ENST00000522430 1102 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 OR5B10P-201ENST00000532869 642 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC087565.1-201ENST00000565061 391 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC010542.1-201ENST00000568430 555 ntTSL 4 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC8.09□□□□□ -1.11
COL9A1P20849 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC073539.2-201ENST00000597113 165 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 CDC37L1-AS1-201ENST00000607997 463 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 AC062037.2-201ENST00000610137 73 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 AL157817.1-201ENST00000614264 790 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 AC067931.1-201ENST00000624190 671 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 AC138627.2-201ENST00000624202 601 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 NR1I3-235ENST00000628566 1201 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 ARMC3-202ENST00000376528 3258 ntTSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 NECAP1-210ENST00000638237 2517 ntAPPRIS ALT1 TSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC8.09□□□□□ -1.11
COL9A1P20849 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC8.09□□□□□ -1.11
COL9A1P20849 CDY2B-201ENST00000382867 1961 ntAPPRIS ALT1 BASIC8.09□□□□□ -1.11
COL9A1P20849 CHAF1B-201ENST00000314103 4480 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 PCDH15-233ENST00000621708 5700 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 GPATCH11-202ENST00000409774 3906 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 AL035555.1-201ENST00000404462 1790 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 ZMAT4-201ENST00000297737 2466 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
COL9A1P20849 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 PWAR5-201ENST00000624480 3180 ntBASIC8.09□□□□□ -1.11
COL9A1P20849 PROX2-202ENST00000556489 3878 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL9A1P20849 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC8.09□□□□□ -1.11
COL9A1P20849 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.12
COL9A1P20849 AC011453.1-201ENST00000597619 2239 ntBASIC8.09□□□□□ -1.12
COL9A1P20849 DCLK1-202ENST00000360631 8007 ntAPPRIS ALT2 TSL 5 BASIC8.09□□□□□ -1.12
COL9A1P20849 ARNTL2-203ENST00000311001 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.12
COL9A1P20849 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC8.09□□□□□ -1.12
COL9A1P20849 HERC2P3-206ENST00000429257 4088 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 WDHD1-202ENST00000420358 3722 ntTSL 5 BASIC8.08□□□□□ -1.12
COL9A1P20849 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC8.08□□□□□ -1.12
COL9A1P20849 MIGA1-202ENST00000443751 6409 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL9A1P20849 Z97200.1-201ENST00000606154 2045 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL9A1P20849 STARD4-212ENST00000512160 3500 ntTSL 2 BASIC8.08□□□□□ -1.12
COL9A1P20849 ATG13-201ENST00000359513 4348 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL9A1P20849 ZBTB40-204ENST00000404138 8992 ntAPPRIS P3 TSL 5 BASIC8.08□□□□□ -1.12
COL9A1P20849 MFAP5-203ENST00000433590 2308 ntTSL 2 BASIC8.08□□□□□ -1.12
COL9A1P20849 AC013488.1-201ENST00000526618 1838 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 CCDC191-201ENST00000295878 3976 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL9A1P20849 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL9A1P20849 ZKSCAN3-202ENST00000341464 1794 ntTSL 2 BASIC8.08□□□□□ -1.12
COL9A1P20849 RBM7-204ENST00000541475 6725 ntTSL 2 BASIC8.08□□□□□ -1.12
COL9A1P20849 RPGR-202ENST00000339363 3686 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
COL9A1P20849 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL9A1P20849 RN7SKP78-201ENST00000364711 318 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 OR1N2-201ENST00000373688 1103 ntAPPRIS ALT2 BASIC8.08□□□□□ -1.12
COL9A1P20849 RNU6-98P-201ENST00000384173 107 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 RPL7P25-201ENST00000404151 721 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL9A1P20849 AL807761.1-201ENST00000417622 171 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 UQCRBP1-201ENST00000421129 336 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 PIGX-204ENST00000421265 677 ntTSL 2 BASIC8.08□□□□□ -1.12
COL9A1P20849 RGS17P1-201ENST00000423358 553 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 FTH1P5-201ENST00000425761 545 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC8.08□□□□□ -1.12
COL9A1P20849 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC8.08□□□□□ -1.12
COL9A1P20849 HIGD1AP8-201ENST00000453927 274 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 TRBV8-2-201ENST00000475637 270 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 AL163973.1-201ENST00000484753 577 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC8.08□□□□□ -1.12
COL9A1P20849 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC8.08□□□□□ -1.12
COL9A1P20849 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC8.08□□□□□ -1.12
COL9A1P20849 AC131392.1-201ENST00000506490 633 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 AC138866.2-201ENST00000508650 584 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 GUSBP9-201ENST00000510138 584 ntBASIC8.08□□□□□ -1.12
COL9A1P20849 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC8.08□□□□□ -1.12
COL9A1P20849 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC8.08□□□□□ -1.12
COL9A1P20849 RNU6-201P-201ENST00000517100 61 ntBASIC8.08□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms