RNA–Protein interactions for RNA: ENST00000339363.7

RPGR-202, Transcript of retinitis pigmentosa GTPase regulator, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene RPGR, Length 3,686 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPGR-202ENST00000339363 NISCHQ9Y2I1 1504 aa17.73■□□□□ 0.43
RPGR-202ENST00000339363 SHROOM4Q9ULL8 1493 aa15.87■□□□□ 0.13
RPGR-202ENST00000339363 PELP1Q8IZL8 1130 aaKnown RBP15.76■□□□□ 0.11
RPGR-202ENST00000339363 SUPT5HO00267 1087 aaKnown RBP15.62■□□□□ 0.09
RPGR-202ENST00000339363 HRCP23327 699 aa15.46■□□□□ 0.06
RPGR-202ENST00000339363 MYO15BQ96JP2 1530 aa15.42■□□□□ 0.06
RPGR-202ENST00000339363 MYT1Q01538 1121 aa15.32■□□□□ 0.04
RPGR-202ENST00000339363 PPARGC1BQ86YN6 1023 aaKnown RBP15.3■□□□□ 0.04
RPGR-202ENST00000339363 PCGF6Q9BYE7 350 aa15.25■□□□□ 0.03
RPGR-202ENST00000339363 CHIC1Q5VXU3 224 aa15.19■□□□□ 0.02
RPGR-202ENST00000339363 DCAF8L2P0C7V8 631 aa15.05■□□□□ -0
RPGR-202ENST00000339363 CCDC180Q9P1Z9 1646 aa15.04■□□□□ -0
RPGR-202ENST00000339363 ZCCHC6Q5VYS8 1495 aaKnown RBP15.03■□□□□ -0
RPGR-202ENST00000339363 LOC105371045A0A1W2PR82 267 aa15.02□□□□□ -0.01
RPGR-202ENST00000339363 SCAF1Q9H7N4 1312 aaKnown RBP14.89□□□□□ -0.03
RPGR-202ENST00000339363 EHMT2Q96KQ7 1210 aa14.62□□□□□ -0.07
RPGR-202ENST00000339363 DCAF1Q9Y4B6 1507 aa14.58□□□□□ -0.08
RPGR-202ENST00000339363 GTF3C3Q9Y5Q9 886 aa14.53□□□□□ -0.08
RPGR-202ENST00000339363 CENPBP07199 599 aaPredicted RBP14.52□□□□□ -0.09
RPGR-202ENST00000339363 ZEB1P37275 1124 aaPredicted RBP14.51□□□□□ -0.09
RPGR-202ENST00000339363 FAM9AQ8IZU1 332 aaPredicted RBP14.51□□□□□ -0.09
RPGR-202ENST00000339363 TRIM26Q12899 539 aaPredicted RBP14.5□□□□□ -0.09
RPGR-202ENST00000339363 ACIN1Q9UKV3 1341 aaKnown RBP14.47□□□□□ -0.09
RPGR-202ENST00000339363 NEUROD1Q13562 356 aa14.41□□□□□ -0.1
RPGR-202ENST00000339363 ABCC9O60706 1549 aa14.35□□□□□ -0.11
RPGR-202ENST00000339363 TTBK1Q5TCY1 1321 aaPredicted RBP14.34□□□□□ -0.11
RPGR-202ENST00000339363 TRIM41Q8WV44 630 aa14.28□□□□□ -0.12
RPGR-202ENST00000339363 RSF1Q96T23 1441 aaPredicted RBP14.28□□□□□ -0.12
RPGR-202ENST00000339363 YTHDC1Q96MU7 727 aaKnown RBP14.27□□□□□ -0.13
RPGR-202ENST00000339363 RB1CC1Q8TDY2 1594 aa14.26□□□□□ -0.13
RPGR-202ENST00000339363 BCL11AQ9H165 835 aa14.25□□□□□ -0.13
RPGR-202ENST00000339363 SCRIBQ14160 1630 aa14.22□□□□□ -0.13
RPGR-202ENST00000339363 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.19□□□□□ -0.14
RPGR-202ENST00000339363 DIEXFQ68CQ4 756 aaKnown RBP14.12□□□□□ -0.15
RPGR-202ENST00000339363 CECR2Q9BXF3 1484 aa14.1□□□□□ -0.15
RPGR-202ENST00000339363 NACADO15069 1562 aa14.08□□□□□ -0.15
RPGR-202ENST00000339363 CCER1Q8TC90 406 aaPredicted RBP14.07□□□□□ -0.16
RPGR-202ENST00000339363 MROH2BQ7Z745 1585 aa13.98□□□□□ -0.17
RPGR-202ENST00000339363 WIZO95785 1651 aa13.93□□□□□ -0.18
RPGR-202ENST00000339363 PRKCSHP14314 528 aaPredicted RBP13.93□□□□□ -0.18
RPGR-202ENST00000339363 ANP32EQ9BTT0 268 aa13.93□□□□□ -0.18
RPGR-202ENST00000339363 ABCC8Q09428 1581 aa13.83□□□□□ -0.19
RPGR-202ENST00000339363 ERICH6Q7L0X2 663 aa13.83□□□□□ -0.2
RPGR-202ENST00000339363 CCDC88BA6NC98 1476 aa13.81□□□□□ -0.2
RPGR-202ENST00000339363 CSRNP3Q8WYN3 585 aa13.8□□□□□ -0.2
RPGR-202ENST00000339363 UNC13AQ9UPW8 1703 aa13.78□□□□□ -0.2
RPGR-202ENST00000339363 RUSC2Q8N2Y8 1516 aa13.78□□□□□ -0.2
RPGR-202ENST00000339363 SOGA1O94964 1423 aa13.77□□□□□ -0.2
RPGR-202ENST00000339363 EIF4G1Q04637 1599 aaKnown RBP13.76□□□□□ -0.21
RPGR-202ENST00000339363 CEP162Q5TB80 1403 aa13.69□□□□□ -0.22
RPGR-202ENST00000339363 MIER1Q8N108 512 aa13.67□□□□□ -0.22
RPGR-202ENST00000339363 ZNF316A6NFI3 1004 aaPredicted RBP13.64□□□□□ -0.23
RPGR-202ENST00000339363 HNRNPUL2Q1KMD3 747 aaKnown RBP13.63□□□□□ -0.23
RPGR-202ENST00000339363 BICRAQ9NZM4 1560 aa13.63□□□□□ -0.23
RPGR-202ENST00000339363 BCANQ96GW7 911 aa13.63□□□□□ -0.23
RPGR-202ENST00000339363 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
RPGR-202ENST00000339363 RANGAP1P46060 587 aaPredicted RBP13.6□□□□□ -0.23
RPGR-202ENST00000339363 UBTFP17480 764 aaKnown RBP13.59□□□□□ -0.23
RPGR-202ENST00000339363 TSHZ2Q9NRE2 1034 aa13.58□□□□□ -0.24
RPGR-202ENST00000339363 WRNQ14191 1432 aaPredicted RBP eCLIP13.57□□□□□ -0.24
RPGR-202ENST00000339363 SUPT16HQ9Y5B9 1047 aaKnown RBP13.55□□□□□ -0.24
RPGR-202ENST00000339363 SMARCA2P51531 1590 aa13.52□□□□□ -0.25
RPGR-202ENST00000339363 TNIKQ9UKE5 1360 aa13.5□□□□□ -0.25
RPGR-202ENST00000339363 TOP2AP11388 1531 aaKnown RBP13.46□□□□□ -0.25
RPGR-202ENST00000339363 PABPN1Q86U42 306 aaKnown RBP eCLIP13.46□□□□□ -0.26
RPGR-202ENST00000339363 NEFLP07196 543 aa13.43□□□□□ -0.26
RPGR-202ENST00000339363 SMARCA4P51532 1647 aa13.42□□□□□ -0.26
RPGR-202ENST00000339363 CLSPNQ9HAW4 1339 aa13.42□□□□□ -0.26
RPGR-202ENST00000339363 DNAJC5BQ9UF47 199 aa13.4□□□□□ -0.27
RPGR-202ENST00000339363 KCNH8Q96L42 1107 aa13.39□□□□□ -0.27
RPGR-202ENST00000339363 SYNJ1O43426 1573 aa13.36□□□□□ -0.27
RPGR-202ENST00000339363 ANO8Q9HCE9 1232 aaPredicted RBP13.36□□□□□ -0.27
RPGR-202ENST00000339363 CLIP1P30622 1438 aa13.35□□□□□ -0.27
RPGR-202ENST00000339363 FKBP8Q14318 412 aa13.35□□□□□ -0.27
RPGR-202ENST00000339363 RAPGEF2Q9Y4G8 1499 aa13.35□□□□□ -0.27
RPGR-202ENST00000339363 GOLGA3Q08378 1498 aa13.34□□□□□ -0.27
RPGR-202ENST00000339363 KANK4Q5T7N3 995 aaPredicted RBP13.32□□□□□ -0.28
RPGR-202ENST00000339363 RBM19Q9Y4C8 960 aaKnown RBP13.32□□□□□ -0.28
RPGR-202ENST00000339363 ITGAEP38570 1179 aa13.29□□□□□ -0.28
RPGR-202ENST00000339363 CCDC136Q96JN2 1154 aa13.27□□□□□ -0.29
RPGR-202ENST00000339363 DEKP35659 375 aaKnown RBP13.25□□□□□ -0.29
RPGR-202ENST00000339363 APLP2Q06481 763 aa13.25□□□□□ -0.29
RPGR-202ENST00000339363 CC2D2AQ9P2K1 1620 aa13.25□□□□□ -0.29
RPGR-202ENST00000339363 VPS8Q8N3P4 1428 aa13.24□□□□□ -0.29
RPGR-202ENST00000339363 DHX57Q6P158 1386 aaKnown RBP13.24□□□□□ -0.29
RPGR-202ENST00000339363 KIF21BO75037 1637 aa13.24□□□□□ -0.29
RPGR-202ENST00000339363 EEA1Q15075 1411 aa13.21□□□□□ -0.3
RPGR-202ENST00000339363 CEP164Q9UPV0 1460 aa13.2□□□□□ -0.3
RPGR-202ENST00000339363 NBR1Q14596 966 aa13.2□□□□□ -0.3
RPGR-202ENST00000339363 EIF5BO60841 1220 aaKnown RBP13.19□□□□□ -0.3
RPGR-202ENST00000339363 RTN4Q9NQC3 1192 aaKnown RBP13.19□□□□□ -0.3
RPGR-202ENST00000339363 MYT1LQ9UL68 1186 aa13.18□□□□□ -0.3
RPGR-202ENST00000339363 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.17□□□□□ -0.3
RPGR-202ENST00000339363 RTL5Q5HYW3 569 aaPredicted RBP13.16□□□□□ -0.3
RPGR-202ENST00000339363 SALL2Q9Y467 1007 aaPredicted RBP13.15□□□□□ -0.3
RPGR-202ENST00000339363 HIRIP3Q9BW71 556 aaPredicted RBP13.15□□□□□ -0.3
RPGR-202ENST00000339363 CDK11AQ9UQ88 783 aaPredicted RBP13.15□□□□□ -0.3
RPGR-202ENST00000339363 ARAP1Q96P48 1450 aa13.14□□□□□ -0.31
RPGR-202ENST00000339363 MSH5O43196 834 aa13.07□□□□□ -0.32
RPGR-202ENST00000339363 SIN3AQ96ST3 1273 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms