Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 IGKV3D-25-201ENST00000519599 235 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.28□□□□□ -1.56
SHOX2O60902 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC5.28□□□□□ -1.56
SHOX2O60902 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SHOX2O60902 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC5.28□□□□□ -1.56
SHOX2O60902 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.28□□□□□ -1.56
SHOX2O60902 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.28□□□□□ -1.56
SHOX2O60902 MIR4776-2-201ENST00000580204 80 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 AL162431.4-201ENST00000604674 411 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 AC091979.2-201ENST00000607514 214 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHOX2O60902 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SHOX2O60902 QRSL1P1-201ENST00000400977 1540 ntBASIC5.28□□□□□ -1.56
SHOX2O60902 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.28□□□□□ -1.56
SHOX2O60902 AC063976.2-201ENST00000425667 3556 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.27□□□□□ -1.57
SHOX2O60902 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
SHOX2O60902 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 RBBP4P5-201ENST00000398583 1266 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 RNA5SP146-201ENST00000410743 123 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.27□□□□□ -1.57
SHOX2O60902 CKS1BP6-201ENST00000424932 240 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 AC009238.2-201ENST00000431026 355 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.27□□□□□ -1.57
SHOX2O60902 RPL12P17-201ENST00000432393 498 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC5.27□□□□□ -1.57
SHOX2O60902 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
SHOX2O60902 GYG1P1-201ENST00000460864 698 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 AK5-208ENST00000478255 556 ntTSL 2 BASIC5.27□□□□□ -1.57
SHOX2O60902 RPL21P6-201ENST00000479171 504 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 RN7SL57P-201ENST00000493687 290 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.27□□□□□ -1.57
SHOX2O60902 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC5.27□□□□□ -1.57
SHOX2O60902 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC5.27□□□□□ -1.57
SHOX2O60902 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.27□□□□□ -1.57
SHOX2O60902 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.27□□□□□ -1.57
SHOX2O60902 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.27□□□□□ -1.57
SHOX2O60902 AL049830.4-201ENST00000555149 351 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 AL356801.1-201ENST00000559320 294 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.27□□□□□ -1.57
SHOX2O60902 MIR4502-201ENST00000580432 81 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.27□□□□□ -1.57
SHOX2O60902 RN7SL230P-201ENST00000580835 303 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 AC005726.4-201ENST00000582858 458 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC5.27□□□□□ -1.57
SHOX2O60902 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SHOX2O60902 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
SHOX2O60902 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.27□□□□□ -1.57
SHOX2O60902 AC233280.2-201ENST00000603917 1070 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 AC124916.2-201ENST00000604416 224 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 AC091167.5-201ENST00000605689 894 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 AC104118.1-201ENST00000607625 1589 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 MIPEPP2-201ENST00000422560 1819 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 PDZK1P1-202ENST00000425209 1350 ntBASIC5.27□□□□□ -1.57
SHOX2O60902 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHOX2O60902 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHOX2O60902 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.26□□□□□ -1.57
SHOX2O60902 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.26□□□□□ -1.57
SHOX2O60902 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.26□□□□□ -1.57
SHOX2O60902 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHOX2O60902 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SHOX2O60902 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.26□□□□□ -1.57
SHOX2O60902 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHOX2O60902 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SHOX2O60902 SNORA51.1-201ENST00000363243 140 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHOX2O60902 AC136624.1-201ENST00000400791 413 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 MIR937-201ENST00000401271 86 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 RN7SKP206-201ENST00000410823 293 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 FABP7P1-201ENST00000424004 391 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AL139148.1-201ENST00000427122 680 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SHOX2O60902 ATP5LP2-201ENST00000440646 311 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AC007383.1-201ENST00000445875 636 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AC092754.1-201ENST00000472975 479 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 RNA5SP340-201ENST00000517132 107 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.26□□□□□ -1.57
SHOX2O60902 HMGN2P36-201ENST00000529541 409 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 OR4A41P-201ENST00000533053 928 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AC005868.1-201ENST00000536421 331 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.26□□□□□ -1.57
SHOX2O60902 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.26□□□□□ -1.57
SHOX2O60902 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.26□□□□□ -1.57
SHOX2O60902 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.26□□□□□ -1.57
SHOX2O60902 AC244517.3-201ENST00000616254 1235 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AC016769.4-201ENST00000616893 535 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AC079298.2-201ENST00000623885 459 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 AC111152.1-202ENST00000635848 339 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SHOX2O60902 AC120338.1-201ENST00000625074 1541 ntBASIC5.26□□□□□ -1.57
SHOX2O60902 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.26□□□□□ -1.57
SHOX2O60902 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 197.3 ms