Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CASC22-202ENST00000628396 802 ntTSL 5 BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 AC010325.3-201ENST00000641084 394 ntBASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 CCT8P1-201ENST00000413611 1657 ntBASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.36□□□□□ -1.39
TRIM39Q9HCM9 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC022034.1-201ENST00000512867 2156 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 RNU6-1339P-201ENST00000363574 91 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 RNA5SP77-201ENST00000365394 120 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 Y_RNA.465-201ENST00000384293 102 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 MIR320B1-201ENST00000390209 79 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC003045.1-201ENST00000398779 713 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 RNU4-72P-201ENST00000410754 173 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 LUZP4P1-201ENST00000415420 344 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AL157884.1-201ENST00000424561 454 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC234064.1-201ENST00000436312 247 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 FGF7P5-201ENST00000441829 291 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 ARL5AP2-201ENST00000444698 533 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC005002.1-201ENST00000447458 540 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC097359.1-201ENST00000447946 463 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AL445669.2-201ENST00000454425 421 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 XACT-201ENST00000468762 497 ntTSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC128716.1-201ENST00000475129 166 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 GM2AP2-201ENST00000491764 562 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 RPS27P20-201ENST00000492051 246 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC087373.1-201ENST00000524920 491 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC008015.1-201ENST00000555505 465 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC002400.1-201ENST00000569310 726 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AL589863.1-201ENST00000595383 631 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AL021368.3-201ENST00000607119 578 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 POLR2B-202ENST00000381227 4108 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 AL137100.1-201ENST00000556703 1620 ntBASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
TRIM39Q9HCM9 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AL354854.1-201ENST00000455940 1363 ntBASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
TRIM39Q9HCM9 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms