RNA–Protein interactions for RNA: ENST00000363574.1

RNU6-1339P-201, Transcript of RNA, U6 small nuclear 1339, pseudogene, humanhuman

BASIC

Gene RNU6-1339P, Length 91 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-1339P-201ENST00000363574 CHIC1Q5VXU3 224 aa18.09■□□□□ 0.49
RNU6-1339P-201ENST00000363574 AEBP2Q6ZN18 517 aaPredicted RBP17.96■□□□□ 0.47
RNU6-1339P-201ENST00000363574 PHF23Q9BUL5 403 aaPredicted RBP16■□□□□ 0.15
RNU6-1339P-201ENST00000363574 SENP3Q9H4L4 574 aaPredicted RBP15.09■□□□□ 0.01
RNU6-1339P-201ENST00000363574 PLPPR3Q6T4P5 718 aa14.92□□□□□ -0.02
RNU6-1339P-201ENST00000363574 ADRA2BP18089 450 aa14.01□□□□□ -0.17
RNU6-1339P-201ENST00000363574 FOXD1Q16676 465 aa13.97□□□□□ -0.17
RNU6-1339P-201ENST00000363574 PPP6R1Q9UPN7 881 aa13.93□□□□□ -0.18
RNU6-1339P-201ENST00000363574 KCNA4P22459 653 aa13.62□□□□□ -0.23
RNU6-1339P-201ENST00000363574 EHMT2Q96KQ7 1210 aa13.36□□□□□ -0.27
RNU6-1339P-201ENST00000363574 PIAS4Q8N2W9 510 aaPredicted RBP13.3□□□□□ -0.28
RNU6-1339P-201ENST00000363574 PPP4R3CPQ6ZMV5 832 aa13.24□□□□□ -0.29
RNU6-1339P-201ENST00000363574 SLC4A1APQ9BWU0 796 aaKnown RBP13.05□□□□□ -0.32
RNU6-1339P-201ENST00000363574 NCBP3Q53F19 620 aaKnown RBP13.03□□□□□ -0.32
RNU6-1339P-201ENST00000363574 CSRNP3Q8WYN3 585 aa12.96□□□□□ -0.33
RNU6-1339P-201ENST00000363574 NPM3O75607 178 aaKnown RBP12.89□□□□□ -0.35
RNU6-1339P-201ENST00000363574 CNKSR2Q8WXI2 1034 aa12.73□□□□□ -0.37
RNU6-1339P-201ENST00000363574 SCAF1Q9H7N4 1312 aaKnown RBP12.67□□□□□ -0.38
RNU6-1339P-201ENST00000363574 MSH5O43196 834 aa12.61□□□□□ -0.39
RNU6-1339P-201ENST00000363574 ZBTB22O15209 634 aa12.57□□□□□ -0.4
RNU6-1339P-201ENST00000363574 MAPK8IP2Q13387 824 aaPredicted RBP12.47□□□□□ -0.41
RNU6-1339P-201ENST00000363574 DNAJC5BQ9UF47 199 aa12.43□□□□□ -0.42
RNU6-1339P-201ENST00000363574 FOXD4L1Q9NU39 408 aa12.34□□□□□ -0.43
RNU6-1339P-201ENST00000363574 RNF216Q9NWF9 866 aaPredicted RBP12.34□□□□□ -0.43
RNU6-1339P-201ENST00000363574 DMRT2Q9Y5R5 561 aa12.16□□□□□ -0.46
RNU6-1339P-201ENST00000363574 HOXD11P31277 338 aaPredicted RBP12.15□□□□□ -0.46
RNU6-1339P-201ENST00000363574 SLC4A2P04920 1241 aa12.04□□□□□ -0.48
RNU6-1339P-201ENST00000363574 MYCNP04198 464 aaPredicted RBP11.87□□□□□ -0.51
RNU6-1339P-201ENST00000363574 ATXN8OSP0DMR3 200 aa11.85□□□□□ -0.51
RNU6-1339P-201ENST00000363574 RTN4Q9NQC3 1192 aaKnown RBP11.66□□□□□ -0.54
RNU6-1339P-201ENST00000363574 FKBP8Q14318 412 aa11.65□□□□□ -0.54
RNU6-1339P-201ENST00000363574 AMER1Q5JTC6 1135 aaPredicted RBP11.63□□□□□ -0.55
RNU6-1339P-201ENST00000363574 DCAF8L1A6NGE4 600 aa11.57□□□□□ -0.56
RNU6-1339P-201ENST00000363574 ATF5Q9Y2D1 282 aaPredicted RBP11.56□□□□□ -0.56
RNU6-1339P-201ENST00000363574 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.54□□□□□ -0.56
RNU6-1339P-201ENST00000363574 SLC24A1O60721 1099 aa11.47□□□□□ -0.57
RNU6-1339P-201ENST00000363574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.46□□□□□ -0.57
RNU6-1339P-201ENST00000363574 HNRNPUL2Q1KMD3 747 aaKnown RBP11.46□□□□□ -0.57
RNU6-1339P-201ENST00000363574 SAMD1Q6SPF0 538 aaPredicted RBP11.46□□□□□ -0.57
RNU6-1339P-201ENST00000363574 U3KPZ7 1027 aaPredicted RBP11.46□□□□□ -0.57
RNU6-1339P-201ENST00000363574 ZNF219Q9P2Y4 722 aaPredicted RBP11.27□□□□□ -0.61
RNU6-1339P-201ENST00000363574 APLP2Q06481 763 aa11.19□□□□□ -0.62
RNU6-1339P-201ENST00000363574 SPDYE4A6NLX3 237 aa11.08□□□□□ -0.64
RNU6-1339P-201ENST00000363574 MKRN4PQ13434 485 aaPredicted RBP11.08□□□□□ -0.64
RNU6-1339P-201ENST00000363574 FBXO3Q9UK99 471 aa11.04□□□□□ -0.64
RNU6-1339P-201ENST00000363574 PROM2Q8N271 834 aa11.02□□□□□ -0.65
RNU6-1339P-201ENST00000363574 SPINK5Q9NQ38 1064 aaPredicted RBP10.97□□□□□ -0.65
RNU6-1339P-201ENST00000363574 FBLN2P98095 1184 aa10.96□□□□□ -0.65
RNU6-1339P-201ENST00000363574 TRHP20396 242 aaPredicted RBP10.95□□□□□ -0.66
RNU6-1339P-201ENST00000363574 POLA2Q14181 598 aa10.92□□□□□ -0.66
RNU6-1339P-201ENST00000363574 VASPP50552 380 aaPredicted RBP10.91□□□□□ -0.66
RNU6-1339P-201ENST00000363574 RNF39Q9H2S5 420 aa10.89□□□□□ -0.67
RNU6-1339P-201ENST00000363574 CAPN15O75808 1086 aa10.86□□□□□ -0.67
RNU6-1339P-201ENST00000363574 IFNLR1Q8IU57 520 aaPredicted RBP10.83□□□□□ -0.68
RNU6-1339P-201ENST00000363574 C1QBPQ07021 282 aaKnown RBP10.77□□□□□ -0.69
RNU6-1339P-201ENST00000363574 ZBTB12Q9Y330 459 aaPredicted RBP10.76□□□□□ -0.69
RNU6-1339P-201ENST00000363574 PLCB2Q00722 1185 aa10.74□□□□□ -0.69
RNU6-1339P-201ENST00000363574 ABCB7O75027 752 aa10.73□□□□□ -0.69
RNU6-1339P-201ENST00000363574 PKD2Q13563 968 aa10.7□□□□□ -0.7
RNU6-1339P-201ENST00000363574 DCAF8L2P0C7V8 631 aa10.65□□□□□ -0.7
RNU6-1339P-201ENST00000363574 HAP1P54257 671 aaPredicted RBP10.58□□□□□ -0.72
RNU6-1339P-201ENST00000363574 ZNF692Q9BU19 519 aaPredicted RBP10.58□□□□□ -0.72
RNU6-1339P-201ENST00000363574 DSG3P32926 999 aa10.57□□□□□ -0.72
RNU6-1339P-201ENST00000363574 SPOCK2Q92563 424 aa10.57□□□□□ -0.72
RNU6-1339P-201ENST00000363574 KLHL34Q8N239 644 aa10.56□□□□□ -0.72
RNU6-1339P-201ENST00000363574 OSCARQ8IYS5 282 aa10.54□□□□□ -0.72
RNU6-1339P-201ENST00000363574 STAG3Q9UJ98 1225 aa10.54□□□□□ -0.72
RNU6-1339P-201ENST00000363574 SSUH2Q9Y2M2 353 aa10.54□□□□□ -0.72
RNU6-1339P-201ENST00000363574 SPDYE2BA6NHP3 402 aa10.53□□□□□ -0.72
RNU6-1339P-201ENST00000363574 SPDYE6P0CI01 402 aa10.53□□□□□ -0.72
RNU6-1339P-201ENST00000363574 SPDYE2Q495Y8 402 aa10.53□□□□□ -0.72
RNU6-1339P-201ENST00000363574 ECM2O94769 699 aaPredicted RBP10.49□□□□□ -0.73
RNU6-1339P-201ENST00000363574 POTEDQ86YR6 584 aa10.49□□□□□ -0.73
RNU6-1339P-201ENST00000363574 PABPN1Q86U42 306 aaKnown RBP eCLIP10.47□□□□□ -0.73
RNU6-1339P-201ENST00000363574 PLCD3Q8N3E9 789 aa10.47□□□□□ -0.73
RNU6-1339P-201ENST00000363574 VSIG10Q8N0Z9 540 aa10.44□□□□□ -0.74
RNU6-1339P-201ENST00000363574 BBXQ8WY36 941 aaPredicted RBP10.44□□□□□ -0.74
RNU6-1339P-201ENST00000363574 NPM1P06748 294 aaKnown RBP eCLIP10.43□□□□□ -0.74
RNU6-1339P-201ENST00000363574 MIER1Q8N108 512 aa10.42□□□□□ -0.74
RNU6-1339P-201ENST00000363574 RGL2O15211 777 aa10.4□□□□□ -0.74
RNU6-1339P-201ENST00000363574 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.4□□□□□ -0.74
RNU6-1339P-201ENST00000363574 BCANQ96GW7 911 aa10.38□□□□□ -0.75
RNU6-1339P-201ENST00000363574 PAXIP1Q6ZW49 1069 aaPredicted RBP10.35□□□□□ -0.75
RNU6-1339P-201ENST00000363574 CFAP44Q96MT7 982 aa10.32□□□□□ -0.76
RNU6-1339P-201ENST00000363574 KDM2AQ9Y2K7 1162 aa10.32□□□□□ -0.76
RNU6-1339P-201ENST00000363574 ZBTB47Q9UFB7 747 aaPredicted RBP10.3□□□□□ -0.76
RNU6-1339P-201ENST00000363574 PLEKHG5O94827 1062 aa10.29□□□□□ -0.76
RNU6-1339P-201ENST00000363574 CIZ1Q9ULV3 898 aaPredicted RBP10.29□□□□□ -0.76
RNU6-1339P-201ENST00000363574 SPRYD3Q8NCJ5 442 aa10.26□□□□□ -0.77
RNU6-1339P-201ENST00000363574 CHGAP10645 457 aaKnown RBP10.23□□□□□ -0.77
RNU6-1339P-201ENST00000363574 PRKCSHP14314 528 aaPredicted RBP10.23□□□□□ -0.77
RNU6-1339P-201ENST00000363574 TAOK2Q9UL54 1235 aa10.23□□□□□ -0.77
RNU6-1339P-201ENST00000363574 TRIM41Q8WV44 630 aa10.22□□□□□ -0.77
RNU6-1339P-201ENST00000363574 TSHZ2Q9NRE2 1034 aa10.21□□□□□ -0.77
RNU6-1339P-201ENST00000363574 CACNB1Q02641 598 aaPredicted RBP10.15□□□□□ -0.78
RNU6-1339P-201ENST00000363574 HS6ST3Q8IZP7 471 aa10.15□□□□□ -0.78
RNU6-1339P-201ENST00000363574 GSE1Q14687 1217 aa10.14□□□□□ -0.79
RNU6-1339P-201ENST00000363574 RNF25Q96BH1 459 aaPredicted RBP10.14□□□□□ -0.79
RNU6-1339P-201ENST00000363574 NUBP1P53384 320 aa10.13□□□□□ -0.79
RNU6-1339P-201ENST00000363574 DNAJC5Q9H3Z4 198 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms