Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 FO681491.1-202ENST00000623392 737 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 MTCO1P1-201ENST00000624263 1081 ntBASIC5.51□□□□□ -1.53
VPS39Q96JC1 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
VPS39Q96JC1 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.51□□□□□ -1.53
VPS39Q96JC1 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS39Q96JC1 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS39Q96JC1 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS39Q96JC1 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS39Q96JC1 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS39Q96JC1 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 RNA5SP296-201ENST00000410523 111 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 RN7SKP240-201ENST00000410583 375 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 AC115283.1-201ENST00000427353 400 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 BX119321.1-201ENST00000428912 797 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 AP006222.1-205ENST00000450734 457 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 HLA-DPA3-207ENST00000454398 229 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS39Q96JC1 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
VPS39Q96JC1 RNA5SP271-201ENST00000516700 88 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 AC079600.1-201ENST00000550326 297 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 FAM106CP-201ENST00000582212 507 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 OR51C1P-201ENST00000608504 942 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
VPS39Q96JC1 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.5□□□□□ -1.53
VPS39Q96JC1 MRRFP1-201ENST00000435941 1675 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 SRRM1P3-201ENST00000426911 2678 ntBASIC5.5□□□□□ -1.53
VPS39Q96JC1 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 RNA5SP131-201ENST00000365452 119 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 MIR551A-201ENST00000385042 96 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 AL136231.1-201ENST00000429407 730 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 AC021193.1-201ENST00000511607 420 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 RNU6-615P-201ENST00000516065 106 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 AC005363.1-201ENST00000530779 351 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 AP004609.2-201ENST00000532177 190 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 AC108738.1-201ENST00000603703 237 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 MAPK10-338ENST00000641647 3362 ntBASIC5.49□□□□□ -1.53
VPS39Q96JC1 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
VPS39Q96JC1 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
VPS39Q96JC1 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS39Q96JC1 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS39Q96JC1 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms