Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC108099.1-201ENST00000564402 3258 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 SAMMSON-213ENST00000641336 1521 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 TANK-205ENST00000405852 2155 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 VIT-202ENST00000379242 2810 ntAPPRIS P3 TSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 MFF-206ENST00000392059 1710 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 C6orf89-202ENST00000359359 2565 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 TMSB4XP2-201ENST00000335179 210 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 RNU6-1188P-201ENST00000363795 107 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 Y_RNA.255-201ENST00000364581 97 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 RNU6-1013P-201ENST00000384180 107 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AP000534.2-201ENST00000412729 568 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 RPL37P10-201ENST00000412884 288 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AL137014.1-201ENST00000420490 1226 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 ERLEC1P1-201ENST00000433806 578 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 HMGB3P10-201ENST00000434734 572 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 RPL37A-204ENST00000441179 529 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 EFCAB14P1-201ENST00000442409 463 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AL441992.1-201ENST00000443631 544 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC007383.1-201ENST00000445875 636 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 SFTPA3P-201ENST00000446429 367 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 OR2AI1P-201ENST00000448534 932 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 LINC00572-201ENST00000450264 575 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 PA2G4P4-201ENST00000473864 1182 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 MED28P2-201ENST00000475771 317 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 MYADML-203ENST00000491596 951 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 HIGD1AP14-201ENST00000507617 282 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 KRT18P54-201ENST00000513396 748 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 Y_RNA.682-201ENST00000516457 100 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AP003119.1-201ENST00000533437 538 ntTSL 4 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC009779.4-201ENST00000554248 611 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 TRAV15-201ENST00000556680 249 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 NCAPGP2-201ENST00000557911 754 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC027808.2-203ENST00000558261 638 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 LINC02137-201ENST00000561906 644 ntTSL 3 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 SSX2B-202ENST00000596480 1291 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 VDAC1P5-201ENST00000603132 844 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC004908.1-201ENST00000606572 541 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 RN7SL715P-201ENST00000606972 286 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 Metazoa_SRP.46-201ENST00000611137 251 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC133104.2-201ENST00000615272 193 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC124319.3-201ENST00000616832 526 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 C1orf137-201ENST00000624685 386 ntTSL 3 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 CASR-201ENST00000490131 4015 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 PIK3AP1-203ENST00000371110 3151 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 LMO3-204ENST00000354662 3574 ntAPPRIS P1 TSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 FAM217B-202ENST00000360816 5036 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 AC006020.1-201ENST00000420179 1854 ntBASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 PRICKLE2-AS3-201ENST00000473434 2496 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 STK32B-207ENST00000512636 3272 ntTSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 PTPRD-AS1-201ENST00000430766 1959 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 PARP2-204ENST00000527915 1980 ntTSL 2 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 TIMD4-201ENST00000274532 1369 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 SEPT4-216ENST00000580844 1396 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.11
VPS9D1Q9Y2B5 REG4-203ENST00000369401 2327 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 ZC3H15-201ENST00000337859 2138 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 PLA2G7-202ENST00000537365 1747 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 GLI1-201ENST00000228682 3613 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 GPM6B-205ENST00000454189 3957 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 UIMC1-211ENST00000510698 1334 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 FHL1-230ENST00000630084 1335 ntTSL 2 BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 AC114324.1-201ENST00000504077 3152 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 NF1P8-201ENST00000415351 1461 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 AP004289.2-201ENST00000444413 1457 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 PVALB-201ENST00000216200 595 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 RNU4-31P-201ENST00000384211 141 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 RNVU1-15-201ENST00000384476 165 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 RNU6-1109P-201ENST00000391187 107 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 AL591416.1-201ENST00000404015 867 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 MIR548K-201ENST00000408406 116 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 RNU4-26P-201ENST00000410270 107 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 AL450992.3-201ENST00000413192 568 ntBASIC8.09□□□□□ -1.11
VPS9D1Q9Y2B5 AC074085.1-201ENST00000413598 418 ntBASIC8.09□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms