Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AC009148.1-201ENST00000570148 2693 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 MIAT-218ENST00000613780 10143 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 RLIMP2-201ENST00000427891 1563 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 MTCO1P14-201ENST00000441695 1559 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 ERI2-215ENST00000569729 2646 ntTSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 CCNK-201ENST00000389879 3524 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
HLA-CQ95604 SCG3-201ENST00000220478 3315 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC7.89□□□□□ -1.15
HLA-CQ95604 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 PDZK1-202ENST00000417171 2230 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 AL355103.1-201ENST00000557246 2226 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 WDR11-AS1-203ENST00000598981 2242 ntTSL 5 BASIC7.89□□□□□ -1.15
HLA-CQ95604 MXI1-203ENST00000361248 2188 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 CD164-201ENST00000275080 2954 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC7.89□□□□□ -1.15
HLA-CQ95604 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 Y_RNA.384-201ENST00000383909 102 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 MIR559-201ENST00000385188 96 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC005522.1-201ENST00000395416 346 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 RN7SKP232-201ENST00000410170 290 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC018630.2-202ENST00000422992 927 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC7.89□□□□□ -1.15
HLA-CQ95604 RPS27AP6-201ENST00000427962 448 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC079807.1-201ENST00000429993 481 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC7.89□□□□□ -1.15
HLA-CQ95604 LINC01525-201ENST00000442182 511 ntTSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 RPS18P1-201ENST00000447840 458 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 BX842559.2-201ENST00000451418 605 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 RPL26P30-201ENST00000453533 435 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC099670.1-201ENST00000455141 783 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC7.89□□□□□ -1.15
HLA-CQ95604 RN7SL153P-201ENST00000486501 292 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 RPL37P23-201ENST00000492641 294 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC110792.2-201ENST00000510278 224 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC233724.10-201ENST00000510454 409 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 RNU6-1170P-201ENST00000515974 106 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 RNU6-885P-201ENST00000516607 104 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC7.89□□□□□ -1.15
HLA-CQ95604 TPM3P3-201ENST00000521343 354 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC013828.2-201ENST00000532487 235 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 RPL17-208ENST00000580261 669 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC7.89□□□□□ -1.15
HLA-CQ95604 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC7.89□□□□□ -1.15
HLA-CQ95604 RPS27AP19-201ENST00000597285 458 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC008738.6-201ENST00000604605 569 ntTSL 4 BASIC7.89□□□□□ -1.15
HLA-CQ95604 AC008115.3-201ENST00000614874 549 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AL132822.1-201ENST00000617063 513 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC068722.2-201ENST00000618734 544 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC024940.5-201ENST00000622889 474 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 AC129908.1-201ENST00000624553 648 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
HLA-CQ95604 XRCC6P4-201ENST00000518193 2067 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 LCA5-201ENST00000369846 4542 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 DDX10P2-201ENST00000417796 2614 ntBASIC7.89□□□□□ -1.15
HLA-CQ95604 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 MCM8-204ENST00000378896 3769 ntAPPRIS P4 TSL 1 (best) BASIC7.89□□□□□ -1.15
HLA-CQ95604 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 NIM1K-204ENST00000512796 2929 ntAPPRIS P1 TSL 2 BASIC7.89□□□□□ -1.15
HLA-CQ95604 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC7.88□□□□□ -1.15
HLA-CQ95604 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC7.88□□□□□ -1.15
HLA-CQ95604 EPYC-201ENST00000261172 1539 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 CACNA1D-202ENST00000350061 7636 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 GABRP-201ENST00000265294 3310 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC7.88□□□□□ -1.15
HLA-CQ95604 PTPDC1-204ENST00000620992 4437 ntAPPRIS ALT2 TSL 2 BASIC7.88□□□□□ -1.15
HLA-CQ95604 USP32P2-201ENST00000412260 4329 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 SPARC-201ENST00000231061 3701 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 AC011294.1-202ENST00000451905 1947 ntTSL 2 BASIC7.88□□□□□ -1.15
HLA-CQ95604 DIAPH3-202ENST00000377908 3549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
HLA-CQ95604 MORF4L2-210ENST00000451301 1830 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms