Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDCBPO00560 AC084754.1-201ENST00000463466 464 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SDCBPO00560 AC092754.1-201ENST00000472975 479 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 AC007998.1-201ENST00000474156 672 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 AC069304.1-201ENST00000491593 704 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 PSMA2P2-201ENST00000504319 686 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 NPM1P21-201ENST00000513394 762 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 SCARNA16.4-201ENST00000516956 187 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 NRBF2P4-201ENST00000520874 850 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.5□□□□□ -1.69
SDCBPO00560 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.5□□□□□ -1.69
SDCBPO00560 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.5□□□□□ -1.69
SDCBPO00560 AC010547.6-201ENST00000571789 193 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC4.5□□□□□ -1.69
SDCBPO00560 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.5□□□□□ -1.69
SDCBPO00560 AC007683.2-201ENST00000624681 714 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 AP003400.3-201ENST00000624904 346 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC4.5□□□□□ -1.69
SDCBPO00560 SAMMSON-227ENST00000642114 1199 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
SDCBPO00560 AL731532.2-201ENST00000623542 1953 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDCBPO00560 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SDCBPO00560 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.5□□□□□ -1.69
SDCBPO00560 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SDCBPO00560 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.5□□□□□ -1.69
SDCBPO00560 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.5□□□□□ -1.69
SDCBPO00560 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SDCBPO00560 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDCBPO00560 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SDCBPO00560 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SDCBPO00560 AP001157.1-201ENST00000550837 2339 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.5□□□□□ -1.69
SDCBPO00560 AL022322.2-201ENST00000624072 20397 ntBASIC4.5□□□□□ -1.69
SDCBPO00560 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
SDCBPO00560 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.49□□□□□ -1.69
SDCBPO00560 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.49□□□□□ -1.69
SDCBPO00560 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.49□□□□□ -1.69
SDCBPO00560 AL121878.1-201ENST00000418638 859 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.49□□□□□ -1.69
SDCBPO00560 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC4.49□□□□□ -1.69
SDCBPO00560 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.49□□□□□ -1.69
SDCBPO00560 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.49□□□□□ -1.69
SDCBPO00560 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC4.49□□□□□ -1.69
SDCBPO00560 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.49□□□□□ -1.69
SDCBPO00560 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.49□□□□□ -1.69
SDCBPO00560 AC138866.2-201ENST00000508650 584 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC4.49□□□□□ -1.69
SDCBPO00560 IGHVII-60-1-201ENST00000519079 256 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.49□□□□□ -1.69
SDCBPO00560 LSM3P2-201ENST00000551246 273 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 AC022884.2-201ENST00000578535 580 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 AC023389.2-201ENST00000580031 955 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC4.49□□□□□ -1.69
SDCBPO00560 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.49□□□□□ -1.69
SDCBPO00560 AL118522.2-201ENST00000616045 615 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 MIR6839-201ENST00000620425 113 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 AC006600.2-201ENST00000624834 2506 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.49□□□□□ -1.69
SDCBPO00560 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.49□□□□□ -1.69
SDCBPO00560 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC4.49□□□□□ -1.69
SDCBPO00560 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
SDCBPO00560 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 AL603750.1-201ENST00000624216 1717 ntBASIC4.49□□□□□ -1.69
SDCBPO00560 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SDCBPO00560 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
SDCBPO00560 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.48□□□□□ -1.69
SDCBPO00560 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
SDCBPO00560 AC068870.3-201ENST00000625077 2536 ntBASIC4.48□□□□□ -1.69
SDCBPO00560 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SDCBPO00560 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SDCBPO00560 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.48□□□□□ -1.69
SDCBPO00560 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
SDCBPO00560 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SDCBPO00560 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SDCBPO00560 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.48□□□□□ -1.69
SDCBPO00560 RN7SKP292-201ENST00000365522 317 ntBASIC4.48□□□□□ -1.69
SDCBPO00560 MGST1-205ENST00000396210 914 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SDCBPO00560 DBIP1-201ENST00000401435 260 ntBASIC4.48□□□□□ -1.69
SDCBPO00560 CTSL3P-202ENST00000412179 788 ntBASIC4.48□□□□□ -1.69
SDCBPO00560 SDHDP6-201ENST00000414693 480 ntBASIC4.48□□□□□ -1.69
SDCBPO00560 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.48□□□□□ -1.69
SDCBPO00560 RPL12P17-201ENST00000432393 498 ntBASIC4.48□□□□□ -1.69
SDCBPO00560 AC002504.1-201ENST00000438281 691 ntBASIC4.48□□□□□ -1.69
SDCBPO00560 SUMO2P3-201ENST00000438311 288 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms