Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC3.64□□□□□ -1.83
PRKDCP78527 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 AC012213.2-201ENST00000562917 4597 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 MASP1-203ENST00000337774 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 EP400-205ENST00000389562 12836 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 OR8G1-202ENST00000641972 5055 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
PRKDCP78527 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
PRKDCP78527 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC3.64□□□□□ -1.83
PRKDCP78527 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC3.64□□□□□ -1.83
PRKDCP78527 AL590065.1-201ENST00000603371 4774 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 AL590240.1-201ENST00000334118 313 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.64□□□□□ -1.83
PRKDCP78527 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC3.64□□□□□ -1.83
PRKDCP78527 AL354714.3-201ENST00000447284 493 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC3.64□□□□□ -1.83
PRKDCP78527 AC010350.1-201ENST00000504908 231 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 ENPP7P9-201ENST00000514456 627 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 RN7SKP260-201ENST00000516907 149 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 AL121890.2-201ENST00000617644 465 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
PRKDCP78527 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 MALAT1-202ENST00000534336 8708 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 TRPM3-203ENST00000358082 4710 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
PRKDCP78527 TRPM3-215ENST00000408909 4701 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
PRKDCP78527 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
PRKDCP78527 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC3.64□□□□□ -1.83
PRKDCP78527 EEF1A1P33-201ENST00000554413 1362 ntBASIC3.64□□□□□ -1.83
PRKDCP78527 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC3.64□□□□□ -1.83
PRKDCP78527 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 GABRA4-201ENST00000264318 11973 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
PRKDCP78527 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
PRKDCP78527 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PRKDCP78527 TRPM8-204ENST00000433712 5291 ntTSL 5 BASIC3.64□□□□□ -1.83
PRKDCP78527 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC3.64□□□□□ -1.83
PRKDCP78527 RPS12P10-201ENST00000427031 377 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC3.63□□□□□ -1.83
PRKDCP78527 VN1R92P-201ENST00000598511 928 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 RHOBTB1-202ENST00000357917 4339 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
PRKDCP78527 COL4A6-201ENST00000334504 6700 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 ABLIM1-206ENST00000392952 6841 ntTSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 COL4A6-208ENST00000538570 6528 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
PRKDCP78527 TNFSF15-202ENST00000374045 6687 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 NEK1-206ENST00000510533 5377 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 AC006210.2-201ENST00000367074 1545 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 CHIC1-202ENST00000373504 6797 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
PRKDCP78527 IL6ST-206ENST00000381298 9057 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 FP325330.3-201ENST00000623760 9537 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 HSFY6P-201ENST00000445573 403 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 OR1H1P-201ENST00000448731 937 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.63□□□□□ -1.83
PRKDCP78527 AC079168.1-201ENST00000458741 345 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC3.63□□□□□ -1.83
PRKDCP78527 CCNG2P1-201ENST00000549521 1000 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.63□□□□□ -1.83
PRKDCP78527 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 GABRB3-204ENST00000541819 5934 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 FBN2-204ENST00000508053 11132 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 SH3GLB1-203ENST00000535010 6227 ntTSL 2 BASIC3.63□□□□□ -1.83
PRKDCP78527 AC107016.1-201ENST00000550463 337 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 AP003400.3-201ENST00000624904 346 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC3.63□□□□□ -1.83
PRKDCP78527 CMKLR1-202ENST00000412676 5110 ntAPPRIS ALT2 TSL 3 BASIC3.63□□□□□ -1.83
PRKDCP78527 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC3.63□□□□□ -1.83
PRKDCP78527 C2orf71-201ENST00000331664 7044 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
PRKDCP78527 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC3.63□□□□□ -1.83
PRKDCP78527 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 AL359715.3-201ENST00000569267 2123 ntBASIC3.63□□□□□ -1.83
PRKDCP78527 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC3.63□□□□□ -1.83
PRKDCP78527 SCN11A-201ENST00000302328 6500 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 LRP2BP-201ENST00000328559 5157 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PRKDCP78527 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
PRKDCP78527 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms