RNA–Protein interactions for RNA: ENST00000510533.5

NEK1-206, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-206ENST00000510533 DCAF8L2P0C7V8 631 aa18.03■□□□□ 0.48
NEK1-206ENST00000510533 SUPT5HO00267 1087 aaKnown RBP17.3■□□□□ 0.36
NEK1-206ENST00000510533 NISCHQ9Y2I1 1504 aa16.91■□□□□ 0.3
NEK1-206ENST00000510533 PELP1Q8IZL8 1130 aaKnown RBP16.89■□□□□ 0.29
NEK1-206ENST00000510533 SHROOM4Q9ULL8 1493 aa16.87■□□□□ 0.29
NEK1-206ENST00000510533 EHMT2Q96KQ7 1210 aa16.78■□□□□ 0.28
NEK1-206ENST00000510533 APLP2Q06481 763 aa16.56■□□□□ 0.24
NEK1-206ENST00000510533 PCGF6Q9BYE7 350 aa16.37■□□□□ 0.21
NEK1-206ENST00000510533 FAM9AQ8IZU1 332 aaPredicted RBP16.34■□□□□ 0.21
NEK1-206ENST00000510533 TTBK1Q5TCY1 1321 aaPredicted RBP16.27■□□□□ 0.19
NEK1-206ENST00000510533 CENPBP07199 599 aaPredicted RBP16.26■□□□□ 0.19
NEK1-206ENST00000510533 ZEB1P37275 1124 aaPredicted RBP16.2■□□□□ 0.18
NEK1-206ENST00000510533 ERICH6Q7L0X2 663 aa16.19■□□□□ 0.18
NEK1-206ENST00000510533 CCER1Q8TC90 406 aaPredicted RBP16.13■□□□□ 0.17
NEK1-206ENST00000510533 TRIM41Q8WV44 630 aa16.02■□□□□ 0.15
NEK1-206ENST00000510533 RANGAP1P46060 587 aaPredicted RBP16■□□□□ 0.15
NEK1-206ENST00000510533 NEFLP07196 543 aa15.89■□□□□ 0.13
NEK1-206ENST00000510533 MYT1Q01538 1121 aa15.88■□□□□ 0.13
NEK1-206ENST00000510533 ATP1B4Q9UN42 357 aaPredicted RBP15.87■□□□□ 0.13
NEK1-206ENST00000510533 UBTFP17480 764 aaKnown RBP15.85■□□□□ 0.13
NEK1-206ENST00000510533 YTHDC1Q96MU7 727 aaKnown RBP15.84■□□□□ 0.13
NEK1-206ENST00000510533 TRIM26Q12899 539 aaPredicted RBP15.65■□□□□ 0.1
NEK1-206ENST00000510533 PPARGC1BQ86YN6 1023 aaKnown RBP15.63■□□□□ 0.09
NEK1-206ENST00000510533 HRCP23327 699 aa15.56■□□□□ 0.08
NEK1-206ENST00000510533 DAXXQ9UER7 740 aaPredicted RBP15.45■□□□□ 0.06
NEK1-206ENST00000510533 ITGAEP38570 1179 aa15.39■□□□□ 0.05
NEK1-206ENST00000510533 POLR3GLQ9BT43 218 aa15.35■□□□□ 0.05
NEK1-206ENST00000510533 LOC105371045A0A1W2PR82 267 aa15.34■□□□□ 0.05
NEK1-206ENST00000510533 HNRNPUL2Q1KMD3 747 aaKnown RBP15.31■□□□□ 0.04
NEK1-206ENST00000510533 CHIC1Q5VXU3 224 aa15.29■□□□□ 0.04
NEK1-206ENST00000510533 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.26■□□□□ 0.03
NEK1-206ENST00000510533 MYT1LQ9UL68 1186 aa15.22■□□□□ 0.03
NEK1-206ENST00000510533 CNGB1Q14028 1251 aaPredicted RBP15.2■□□□□ 0.02
NEK1-206ENST00000510533 DIEXFQ68CQ4 756 aaKnown RBP15.19■□□□□ 0.02
NEK1-206ENST00000510533 RTL5Q5HYW3 569 aaPredicted RBP15.15■□□□□ 0.02
NEK1-206ENST00000510533 ZNF316A6NFI3 1004 aaPredicted RBP15.09■□□□□ 0.01
NEK1-206ENST00000510533 CLSPNQ9HAW4 1339 aa15.06■□□□□ 0
NEK1-206ENST00000510533 SLC4A1APQ9BWU0 796 aaKnown RBP15.02□□□□□ -0.01
NEK1-206ENST00000510533 FAM50AQ14320 339 aaKnown RBP14.97□□□□□ -0.01
NEK1-206ENST00000510533 GTF3C3Q9Y5Q9 886 aa14.94□□□□□ -0.02
NEK1-206ENST00000510533 BCANQ96GW7 911 aa14.92□□□□□ -0.02
NEK1-206ENST00000510533 TRIM52Q96A61 297 aa14.92□□□□□ -0.02
NEK1-206ENST00000510533 NEUROD1Q13562 356 aa14.91□□□□□ -0.02
NEK1-206ENST00000510533 ANP32CO43423 234 aa14.87□□□□□ -0.03
NEK1-206ENST00000510533 CDK11AQ9UQ88 783 aaPredicted RBP14.86□□□□□ -0.03
NEK1-206ENST00000510533 ZNF326Q5BKZ1 582 aaKnown RBP14.76□□□□□ -0.05
NEK1-206ENST00000510533 ZBTB47Q9UFB7 747 aaPredicted RBP14.72□□□□□ -0.05
NEK1-206ENST00000510533 ACIN1Q9UKV3 1341 aaKnown RBP14.72□□□□□ -0.05
NEK1-206ENST00000510533 CANXP27824 592 aaKnown RBP14.65□□□□□ -0.06
NEK1-206ENST00000510533 ANP32AP39687 249 aaKnown RBP14.63□□□□□ -0.07
NEK1-206ENST00000510533 PABPN1Q86U42 306 aaKnown RBP eCLIP14.61□□□□□ -0.07
NEK1-206ENST00000510533 NEFMP07197 916 aa14.55□□□□□ -0.08
NEK1-206ENST00000510533 BCL11AQ9H165 835 aa14.54□□□□□ -0.08
NEK1-206ENST00000510533 CSRNP3Q8WYN3 585 aa14.52□□□□□ -0.08
NEK1-206ENST00000510533 NPM2Q86SE8 214 aaKnown RBP14.52□□□□□ -0.09
NEK1-206ENST00000510533 ABCC9O60706 1549 aa14.51□□□□□ -0.09
NEK1-206ENST00000510533 SLC24A1O60721 1099 aa14.5□□□□□ -0.09
NEK1-206ENST00000510533 FBLN2P98095 1184 aa14.49□□□□□ -0.09
NEK1-206ENST00000510533 P3H3Q8IVL6 736 aa14.49□□□□□ -0.09
NEK1-206ENST00000510533 FKBP8Q14318 412 aa14.49□□□□□ -0.09
NEK1-206ENST00000510533 ARID3CA6NKF2 412 aa14.43□□□□□ -0.1
NEK1-206ENST00000510533 TONSLQ96HA7 1378 aa14.41□□□□□ -0.1
NEK1-206ENST00000510533 ZNF777Q9ULD5 760 aaPredicted RBP14.41□□□□□ -0.1
NEK1-206ENST00000510533 HNRNPUQ00839 825 aaKnown RBP eCLIP14.4□□□□□ -0.1
NEK1-206ENST00000510533 ANP32BQ92688 251 aaKnown RBP14.4□□□□□ -0.1
NEK1-206ENST00000510533 EIF5BO60841 1220 aaKnown RBP14.38□□□□□ -0.11
NEK1-206ENST00000510533 HSP90AA1P07900 732 aaKnown RBP14.36□□□□□ -0.11
NEK1-206ENST00000510533 DDX10Q13206 875 aaKnown RBP14.35□□□□□ -0.11
NEK1-206ENST00000510533 UPF2Q9HAU5 1272 aaKnown RBP14.35□□□□□ -0.11
NEK1-206ENST00000510533 FAM9BQ8IZU0 186 aa14.34□□□□□ -0.11
NEK1-206ENST00000510533 DCAF1Q9Y4B6 1507 aa14.34□□□□□ -0.11
NEK1-206ENST00000510533 CCDC136Q96JN2 1154 aa14.28□□□□□ -0.12
NEK1-206ENST00000510533 SALL2Q9Y467 1007 aaPredicted RBP14.26□□□□□ -0.13
NEK1-206ENST00000510533 TMC1Q8TDI8 760 aa14.24□□□□□ -0.13
NEK1-206ENST00000510533 NBR1Q14596 966 aa14.24□□□□□ -0.13
NEK1-206ENST00000510533 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.23□□□□□ -0.13
NEK1-206ENST00000510533 GLIPR1L2Q4G1C9 344 aa14.23□□□□□ -0.13
NEK1-206ENST00000510533 CHGAP10645 457 aaKnown RBP14.22□□□□□ -0.13
NEK1-206ENST00000510533 MRS2Q9HD23 443 aa14.19□□□□□ -0.14
NEK1-206ENST00000510533 SCAF1Q9H7N4 1312 aaKnown RBP14.18□□□□□ -0.14
NEK1-206ENST00000510533 ESF1Q9H501 851 aaKnown RBP14.17□□□□□ -0.14
NEK1-206ENST00000510533 WDR43Q15061 677 aaKnown RBP eCLIP14.17□□□□□ -0.14
NEK1-206ENST00000510533 MIER1Q8N108 512 aa14.17□□□□□ -0.14
NEK1-206ENST00000510533 STAG3Q9UJ98 1225 aa14.17□□□□□ -0.14
NEK1-206ENST00000510533 CHIC2Q9UKJ5 165 aa14.16□□□□□ -0.14
NEK1-206ENST00000510533 ARXQ96QS3 562 aa14.13□□□□□ -0.15
NEK1-206ENST00000510533 IRX6P78412 446 aaPredicted RBP14.12□□□□□ -0.15
NEK1-206ENST00000510533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.1□□□□□ -0.15
NEK1-206ENST00000510533 SCRIBQ14160 1630 aa14.09□□□□□ -0.15
NEK1-206ENST00000510533 KDM2AQ9Y2K7 1162 aa14.08□□□□□ -0.15
NEK1-206ENST00000510533 EIF4G2P78344 907 aaKnown RBP eCLIP14.06□□□□□ -0.16
NEK1-206ENST00000510533 HIRIP3Q9BW71 556 aaPredicted RBP14.06□□□□□ -0.16
NEK1-206ENST00000510533 TSPY4P0CV99 314 aa14.06□□□□□ -0.16
NEK1-206ENST00000510533 TSPY10P0CW01 314 aa14.06□□□□□ -0.16
NEK1-206ENST00000510533 MTUS2Q5JR59 1369 aa14.05□□□□□ -0.16
NEK1-206ENST00000510533 DDRGK1Q96HY6 314 aa14.04□□□□□ -0.16
NEK1-206ENST00000510533 MYH16Q9H6N6 1097 aa14.04□□□□□ -0.16
NEK1-206ENST00000510533 NPM1P06748 294 aaKnown RBP eCLIP14.02□□□□□ -0.16
NEK1-206ENST00000510533 BECN1Q14457 450 aa14.02□□□□□ -0.17
NEK1-206ENST00000510533 CLIP1P30622 1438 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms