Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 U3.30-201ENST00000391308 210 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 RPL21P108-201ENST00000413857 481 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 AP001324.1-201ENST00000428553 399 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 AC006967.1-201ENST00000467608 589 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 NDUFB4P12-201ENST00000513465 390 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 TBC1D30-204ENST00000542120 7433 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 ERG-208ENST00000417133 5023 ntAPPRIS ALT1 TSL 2 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 AL121657.1-201ENST00000327215 531 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.06□□□□□ -1.6
VPS13AQ96RL7 Y_RNA.333-201ENST00000365274 102 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 TMA16P2-201ENST00000413187 601 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 RPL36AP36-201ENST00000418616 301 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 AC091912.1-201ENST00000511351 248 ntBASIC5.06□□□□□ -1.6
VPS13AQ96RL7 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 RPL12P17-201ENST00000432393 498 ntBASIC5.05□□□□□ -1.6
VPS13AQ96RL7 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 RN7SKP276-201ENST00000516242 268 ntBASIC5.05□□□□□ -1.6
VPS13AQ96RL7 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 ARL2BPP10-201ENST00000446487 531 ntBASIC5.05□□□□□ -1.6
VPS13AQ96RL7 PRSS3P4-201ENST00000453323 162 ntBASIC5.05□□□□□ -1.6
VPS13AQ96RL7 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 AP005119.2-201ENST00000579735 1105 ntBASIC5.05□□□□□ -1.6
VPS13AQ96RL7 LINC01966-201ENST00000595809 821 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS13AQ96RL7 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 ZNF793-202ENST00000542455 4073 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 RN7SKP106-201ENST00000410832 272 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 OR10T1P-201ENST00000424327 947 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC073465.2-201ENST00000440938 498 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 FHP1-201ENST00000442741 703 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AL137845.2-201ENST00000444292 988 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AL121834.1-201ENST00000572284 509 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 IYD-201ENST00000229447 7513 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 SNORD46.1-201ENST00000364139 104 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC008280.1-201ENST00000418851 412 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 RN7SL542P-201ENST00000467147 294 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 MED28P5-201ENST00000528254 438 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 MIR3158-1-201ENST00000583596 81 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 AP003400.3-201ENST00000624904 346 ntBASIC5.04□□□□□ -1.6
VPS13AQ96RL7 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 CAST-202ENST00000325674 3356 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13AQ96RL7 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms