Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC022106.2-201ENST00000620114 757 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 AC211486.4-201ENST00000621495 113 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA3P55318 AL049541.1-201ENST00000630976 642 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC010325.3-201ENST00000641084 394 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.01□□□□□ -1.77
FOXA3P55318 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
FOXA3P55318 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.01□□□□□ -1.77
FOXA3P55318 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 LEKR1-201ENST00000356539 2572 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
FOXA3P55318 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
FOXA3P55318 UBBP2-201ENST00000376781 231 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 VDAC2P1-201ENST00000399358 958 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 MEAF6P1-201ENST00000416092 327 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA3P55318 OR2AH1P-201ENST00000425717 928 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AL389925.1-201ENST00000432257 728 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 RPL35AP21-201ENST00000437667 333 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 VN1R110P-201ENST00000438988 971 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AL136455.1-201ENST00000441083 1240 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
FOXA3P55318 AL031584.1-201ENST00000447169 754 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 BX842559.2-201ENST00000451418 605 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 CFL1P4-201ENST00000451536 498 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AL591473.1-201ENST00000464297 313 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AL122020.1-201ENST00000472287 459 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 RN7SL583P-201ENST00000475692 287 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.01□□□□□ -1.77
FOXA3P55318 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 AC108103.1-201ENST00000511286 446 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA3P55318 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA3P55318 HMGN2P36-201ENST00000529541 409 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA3P55318 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC4.01□□□□□ -1.77
FOXA3P55318 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC4.01□□□□□ -1.77
FOXA3P55318 MIR4776-2-201ENST00000580204 80 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 RN7SL657P-201ENST00000582431 293 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AC018695.5-201ENST00000605872 315 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AL589182.1-201ENST00000611785 320 ntTSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
FOXA3P55318 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 AC027228.2-201ENST00000567141 2154 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
FOXA3P55318 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 AL354854.1-201ENST00000455940 1363 ntBASIC4.01□□□□□ -1.77
FOXA3P55318 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.01□□□□□ -1.77
FOXA3P55318 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4□□□□□ -1.77
FOXA3P55318 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4□□□□□ -1.77
FOXA3P55318 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4□□□□□ -1.77
FOXA3P55318 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 AFP-201ENST00000226359 1914 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 RNFT1P3-201ENST00000340898 1052 ntBASIC4□□□□□ -1.77
FOXA3P55318 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 AC005294.1-201ENST00000355509 281 ntBASIC4□□□□□ -1.77
FOXA3P55318 MIR130B-202ENST00000385018 82 ntBASIC4□□□□□ -1.77
FOXA3P55318 DBIP1-201ENST00000401435 260 ntBASIC4□□□□□ -1.77
FOXA3P55318 AC233289.1-201ENST00000403700 508 ntBASIC4□□□□□ -1.77
FOXA3P55318 ZNF37CP-201ENST00000406795 241 ntBASIC4□□□□□ -1.77
FOXA3P55318 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 AC234781.4-201ENST00000419384 244 ntBASIC4□□□□□ -1.77
FOXA3P55318 OR5M12P-201ENST00000423388 929 ntBASIC4□□□□□ -1.77
FOXA3P55318 RPL12P17-201ENST00000432393 498 ntBASIC4□□□□□ -1.77
FOXA3P55318 RPEP4-201ENST00000437636 602 ntBASIC4□□□□□ -1.77
FOXA3P55318 AC097463.1-201ENST00000447288 481 ntBASIC4□□□□□ -1.77
FOXA3P55318 LINC01364-201ENST00000452509 889 ntTSL 1 (best) BASIC4□□□□□ -1.77
FOXA3P55318 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC4□□□□□ -1.77
FOXA3P55318 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4□□□□□ -1.77
FOXA3P55318 RPSAP37-201ENST00000470913 821 ntBASIC4□□□□□ -1.77
FOXA3P55318 RPS3AP15-201ENST00000483874 781 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms