Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BBS4-201ENST00000268057 2490 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 EEF1A1P22-201ENST00000559385 1380 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 TRIM51EP-201ENST00000524374 1516 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 GJA10-201ENST00000369352 1652 ntAPPRIS P2 BASIC6.72□□□□□ -1.33
COL8A1P27658 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 GPD2-203ENST00000409674 2397 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 NCAPH-202ENST00000427946 2363 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 MSN-201ENST00000360270 3944 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 BORCS7-ASMT-201ENST00000299353 2670 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 ADGRF1-201ENST00000283297 2142 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 AC067945.1-201ENST00000342609 618 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 RNA5SP260-201ENST00000363849 111 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 RNA5SP88-201ENST00000365560 109 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 SSX9-201ENST00000376909 591 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 IGHV4-59-201ENST00000390629 495 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
COL8A1P27658 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 GSTA12P-201ENST00000402398 508 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AL356967.1-201ENST00000406305 431 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 RPL7P44-201ENST00000424827 742 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 MTCO3P46-201ENST00000425787 232 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 LINC01522-201ENST00000428999 429 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 AL358934.1-201ENST00000432346 324 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 PSMD10P2-201ENST00000432890 672 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 LINC01805-201ENST00000436433 572 ntTSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 AL137074.1-201ENST00000442640 465 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 GTF2F2P2-201ENST00000445825 721 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 FABP3P2-201ENST00000453169 399 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 RNU6-1208P-201ENST00000459588 107 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 RPL35P6-201ENST00000490024 372 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC6.72□□□□□ -1.33
COL8A1P27658 KCTD9P5-201ENST00000504141 1170 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 NPM1P21-201ENST00000513394 762 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 IGJP1-201ENST00000522682 475 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 AP003034.1-201ENST00000534621 422 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AC087257.2-201ENST00000538759 928 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 AC048383.1-201ENST00000558226 527 ntTSL 4 BASIC6.72□□□□□ -1.33
COL8A1P27658 AC006270.2-201ENST00000578523 652 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 CDRT8-201ENST00000579752 467 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC6.72□□□□□ -1.33
COL8A1P27658 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC6.72□□□□□ -1.33
COL8A1P27658 AC006335.3-201ENST00000613408 292 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AL445670.1-201ENST00000618889 801 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AC068831.8-201ENST00000620171 435 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 AC073488.7-201ENST00000633785 778 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 CLEC19A-205ENST00000636231 561 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 TRPS1-209ENST00000519674 3116 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 WNK1-220ENST00000574564 1401 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 AL136298.2-201ENST00000556497 1570 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 RBPJ-201ENST00000342295 5860 ntTSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 RXFP2-202ENST00000380314 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 MAP3K7CL-201ENST00000286791 1725 ntTSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 NPEPPS-215ENST00000530173 2864 ntTSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 RAD54B-202ENST00000336148 3068 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 AMPD1-201ENST00000369538 2392 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
COL8A1P27658 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
COL8A1P27658 LRRC37A9P-201ENST00000603850 5376 ntBASIC6.72□□□□□ -1.33
COL8A1P27658 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL8A1P27658 NRG3-206ENST00000545131 2713 ntTSL 5 BASIC6.71□□□□□ -1.33
COL8A1P27658 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.33
COL8A1P27658 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
COL8A1P27658 OR51E1-202ENST00000530215 2942 ntBASIC6.71□□□□□ -1.33
COL8A1P27658 PTBP3-203ENST00000343327 2755 ntTSL 2 BASIC6.71□□□□□ -1.33
COL8A1P27658 ABLIM3-201ENST00000309868 4326 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL8A1P27658 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC6.71□□□□□ -1.33
COL8A1P27658 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC6.71□□□□□ -1.33
COL8A1P27658 LACTB2-AS1-201ENST00000499227 3716 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
COL8A1P27658 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 STRADA-233ENST00000638888 1718 ntTSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 GC-208ENST00000513476 1567 ntTSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 SPRY1-202ENST00000394339 2504 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms