RNA–Protein interactions for RNA: ENST00000512701.6

TTC39B-208, Transcript of tetratricopeptide repeat domain 39B, human

APPRIS P3 TSL 2 BASIC

Gene TTC39B, Length 10,483 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC39B-208	ENST00000512701	DCAF8L2	P0C7V8	631 aa		13.1	□□□□□ -0.31
TTC39B-208	ENST00000512701	EHMT2	Q96KQ7	1210 aa		12.82	□□□□□ -0.36
TTC39B-208	ENST00000512701	SUPT5H	O00267	1087 aa	Known RBP	12.72	□□□□□ -0.37
TTC39B-208	ENST00000512701	SHROOM4	Q9ULL8	1493 aa		12.49	□□□□□ -0.41
TTC39B-208	ENST00000512701	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.4	□□□□□ -0.42
TTC39B-208	ENST00000512701	PCGF6	Q9BYE7	350 aa		12.27	□□□□□ -0.45
TTC39B-208	ENST00000512701	PELP1	Q8IZL8	1130 aa	Known RBP	12.21	□□□□□ -0.45
TTC39B-208	ENST00000512701	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.14	□□□□□ -0.47
TTC39B-208	ENST00000512701	YTHDC1	Q96MU7	727 aa	Known RBP	12.11	□□□□□ -0.47
TTC39B-208	ENST00000512701	ERICH6	Q7L0X2	663 aa		12.05	□□□□□ -0.48
TTC39B-208	ENST00000512701	RANGAP1	P46060	587 aa	Predicted RBP	11.99	□□□□□ -0.49
TTC39B-208	ENST00000512701	MYT1	Q01538	1121 aa		11.99	□□□□□ -0.49
TTC39B-208	ENST00000512701	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.89	□□□□□ -0.51
TTC39B-208	ENST00000512701	CENPB	P07199	599 aa	Predicted RBP	11.88	□□□□□ -0.51
TTC39B-208	ENST00000512701	APLP2	Q06481	763 aa		11.83	□□□□□ -0.52
TTC39B-208	ENST00000512701	CCER1	Q8TC90	406 aa	Predicted RBP	11.83	□□□□□ -0.52
TTC39B-208	ENST00000512701	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.63	□□□□□ -0.55
TTC39B-208	ENST00000512701	NEFL	P07196	543 aa		11.61	□□□□□ -0.55
TTC39B-208	ENST00000512701	NISCH	Q9Y2I1	1504 aa		11.58	□□□□□ -0.56
TTC39B-208	ENST00000512701	CNGB1	Q14028	1251 aa	Predicted RBP	11.58	□□□□□ -0.56
TTC39B-208	ENST00000512701	ZEB1	P37275	1124 aa	Predicted RBP	11.57	□□□□□ -0.56
TTC39B-208	ENST00000512701	HRC	P23327	699 aa		11.53	□□□□□ -0.56
TTC39B-208	ENST00000512701	TRIM41	Q8WV44	630 aa		11.5	□□□□□ -0.57
TTC39B-208	ENST00000512701	UBTF	P17480	764 aa	Known RBP	11.45	□□□□□ -0.58
TTC39B-208	ENST00000512701	POLR3GL	Q9BT43	218 aa		11.45	□□□□□ -0.58
TTC39B-208	ENST00000512701	BCAN	Q96GW7	911 aa		11.43	□□□□□ -0.58
TTC39B-208	ENST00000512701	ITGAE	P38570	1179 aa		11.41	□□□□□ -0.58
TTC39B-208	ENST00000512701	LOC105371045	A0A1W2PR82	267 aa		11.41	□□□□□ -0.58
TTC39B-208	ENST00000512701	TRIM26	Q12899	539 aa	Predicted RBP	11.33	□□□□□ -0.6
TTC39B-208	ENST00000512701	DAXX	Q9UER7	740 aa	Predicted RBP	11.33	□□□□□ -0.6
TTC39B-208	ENST00000512701	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.32	□□□□□ -0.6
TTC39B-208	ENST00000512701	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.32	□□□□□ -0.6
TTC39B-208	ENST00000512701	GTF3C3	Q9Y5Q9	886 aa		11.28	□□□□□ -0.6
TTC39B-208	ENST00000512701	DIEXF	Q68CQ4	756 aa	Known RBP	11.21	□□□□□ -0.61
TTC39B-208	ENST00000512701	RTL5	Q5HYW3	569 aa	Predicted RBP	11.19	□□□□□ -0.62
TTC39B-208	ENST00000512701	CHIC1	Q5VXU3	224 aa		11.18	□□□□□ -0.62
TTC39B-208	ENST00000512701	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.14	□□□□□ -0.63
TTC39B-208	ENST00000512701	BCL11A	Q9H165	835 aa		11.1	□□□□□ -0.63
TTC39B-208	ENST00000512701	CLSPN	Q9HAW4	1339 aa		11.08	□□□□□ -0.63
TTC39B-208	ENST00000512701	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.06	□□□□□ -0.64
TTC39B-208	ENST00000512701	NEUROD1	Q13562	356 aa		11.02	□□□□□ -0.65
TTC39B-208	ENST00000512701	MYT1L	Q9UL68	1186 aa		11	□□□□□ -0.65
TTC39B-208	ENST00000512701	EIF5B	O60841	1220 aa	Known RBP	11	□□□□□ -0.65
TTC39B-208	ENST00000512701	NPM2	Q86SE8	214 aa	Known RBP	10.98	□□□□□ -0.65
TTC39B-208	ENST00000512701	ACIN1	Q9UKV3	1341 aa	Known RBP	10.95	□□□□□ -0.66
TTC39B-208	ENST00000512701	ZNF326	Q5BKZ1	582 aa	Known RBP	10.91	□□□□□ -0.66
TTC39B-208	ENST00000512701	FAM50A	Q14320	339 aa	Known RBP	10.9	□□□□□ -0.67
TTC39B-208	ENST00000512701	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.9	□□□□□ -0.67
TTC39B-208	ENST00000512701	NBR1	Q14596	966 aa		10.88	□□□□□ -0.67
TTC39B-208	ENST00000512701	ARX	Q96QS3	562 aa		10.87	□□□□□ -0.67
TTC39B-208	ENST00000512701	SCAF1	Q9H7N4	1312 aa	Known RBP	10.85	□□□□□ -0.67
TTC39B-208	ENST00000512701	TRIM52	Q96A61	297 aa		10.82	□□□□□ -0.68
TTC39B-208	ENST00000512701	FKBP8	Q14318	412 aa		10.81	□□□□□ -0.68
TTC39B-208	ENST00000512701	ANP32C	O43423	234 aa		10.78	□□□□□ -0.68
TTC39B-208	ENST00000512701	IRX6	P78412	446 aa	Predicted RBP	10.77	□□□□□ -0.69
TTC39B-208	ENST00000512701	CANX	P27824	592 aa	Known RBP	10.73	□□□□□ -0.69
TTC39B-208	ENST00000512701	PLPPR3	Q6T4P5	718 aa		10.73	□□□□□ -0.69
TTC39B-208	ENST00000512701	ARID3C	A6NKF2	412 aa		10.72	□□□□□ -0.69
TTC39B-208	ENST00000512701	ANP32A	P39687	249 aa	Known RBP	10.72	□□□□□ -0.69
TTC39B-208	ENST00000512701	SENP3-EIF4A1	A0A087X0R7	540 aa		10.71	□□□□□ -0.69
TTC39B-208	ENST00000512701	SLC24A1	O60721	1099 aa		10.71	□□□□□ -0.7
TTC39B-208	ENST00000512701	SENP3	Q9H4L4	574 aa	Predicted RBP	10.7	□□□□□ -0.7
TTC39B-208	ENST00000512701	SALL2	Q9Y467	1007 aa	Predicted RBP	10.69	□□□□□ -0.7
TTC39B-208	ENST00000512701	RTN4	Q9NQC3	1192 aa	Known RBP	10.67	□□□□□ -0.7
TTC39B-208	ENST00000512701	FAM9B	Q8IZU0	186 aa		10.61	□□□□□ -0.71
TTC39B-208	ENST00000512701	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.61	□□□□□ -0.71
TTC39B-208	ENST00000512701	P3H3	Q8IVL6	736 aa		10.6	□□□□□ -0.71
TTC39B-208	ENST00000512701	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.59	□□□□□ -0.71
TTC39B-208	ENST00000512701	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
TTC39B-208	ENST00000512701	DDX10	Q13206	875 aa	Known RBP	10.59	□□□□□ -0.71
TTC39B-208	ENST00000512701	MIER1	Q8N108	512 aa		10.57	□□□□□ -0.72
TTC39B-208	ENST00000512701	HSP90AA1	P07900	732 aa	Known RBP	10.52	□□□□□ -0.73
TTC39B-208	ENST00000512701	TPRN	Q4KMQ1	711 aa		10.5	□□□□□ -0.73
TTC39B-208	ENST00000512701	CCDC136	Q96JN2	1154 aa		10.47	□□□□□ -0.73
TTC39B-208	ENST00000512701	LAS1L	Q9Y4W2	734 aa	Known RBP	10.47	□□□□□ -0.73
TTC39B-208	ENST00000512701	GLIPR1L2	Q4G1C9	344 aa		10.46	□□□□□ -0.73
TTC39B-208	ENST00000512701	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.45	□□□□□ -0.74
TTC39B-208	ENST00000512701	ANP32B	Q92688	251 aa	Known RBP	10.45	□□□□□ -0.74
TTC39B-208	ENST00000512701	ANP32E	Q9BTT0	268 aa		10.45	□□□□□ -0.74
TTC39B-208	ENST00000512701	ZNF777	Q9ULD5	760 aa	Predicted RBP	10.44	□□□□□ -0.74
TTC39B-208	ENST00000512701	PABPN1	Q86U42	306 aa	Known RBP eCLIP	10.44	□□□□□ -0.74
TTC39B-208	ENST00000512701	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.42	□□□□□ -0.74
TTC39B-208	ENST00000512701	FBLN2	P98095	1184 aa		10.4	□□□□□ -0.74
TTC39B-208	ENST00000512701	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.39	□□□□□ -0.75
TTC39B-208	ENST00000512701	PLEKHG5	O94827	1062 aa		10.37	□□□□□ -0.75
TTC39B-208	ENST00000512701	CHIC2	Q9UKJ5	165 aa		10.36	□□□□□ -0.75
TTC39B-208	ENST00000512701	MRS2	Q9HD23	443 aa		10.36	□□□□□ -0.75
TTC39B-208	ENST00000512701	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.35	□□□□□ -0.75
TTC39B-208	ENST00000512701	ZBTB7C	A1YPR0	619 aa		10.34	□□□□□ -0.75
TTC39B-208	ENST00000512701	ARID3A	Q99856	593 aa		10.34	□□□□□ -0.75
TTC39B-208	ENST00000512701	UPF2	Q9HAU5	1272 aa	Known RBP	10.34	□□□□□ -0.75
TTC39B-208	ENST00000512701	TONSL	Q96HA7	1378 aa		10.34	□□□□□ -0.75
TTC39B-208	ENST00000512701	MYO15B	Q96JP2	1530 aa		10.32	□□□□□ -0.76
TTC39B-208	ENST00000512701	NCL	P19338	710 aa	Known RBP	10.32	□□□□□ -0.76
TTC39B-208	ENST00000512701	NEFM	P07197	916 aa		10.32	□□□□□ -0.76
TTC39B-208	ENST00000512701	CHGA	P10645	457 aa	Known RBP	10.31	□□□□□ -0.76
TTC39B-208	ENST00000512701	KDM2A	Q9Y2K7	1162 aa		10.31	□□□□□ -0.76
TTC39B-208	ENST00000512701	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.31	□□□□□ -0.76
TTC39B-208	ENST00000512701	TMC1	Q8TDI8	760 aa		10.28	□□□□□ -0.76
TTC39B-208	ENST00000512701	TAOK2	Q9UL54	1235 aa		10.27	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms