Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
TRAIPQ9BWF2 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 RNU6-582P-201ENST00000362989 107 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 Y_RNA.201-201ENST00000364052 96 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 Y_RNA.560-201ENST00000384689 102 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AL021407.1-201ENST00000404531 386 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 RPSAP60-201ENST00000415403 880 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 SMARCE1P1-201ENST00000417747 1186 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC007365.2-201ENST00000428806 458 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 ARL6IP1P2-201ENST00000431356 563 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AL513175.1-201ENST00000431492 780 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 RPL3P11-201ENST00000434028 1146 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 MYL6P3-201ENST00000436904 432 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 THAP5P1-201ENST00000439089 262 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 ACTR3P2-201ENST00000439585 1257 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AL606662.1-201ENST00000445763 553 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC016722.1-201ENST00000453936 652 ntTSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 RN7SL88P-201ENST00000480166 299 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 ACTG1P13-201ENST00000486987 1043 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC146944.3-201ENST00000509969 371 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 MTND5P13-201ENST00000513046 1079 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 RNU6-885P-201ENST00000516607 104 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 LY96-202ENST00000518893 430 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC023161.2-201ENST00000551218 780 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC007954.1-201ENST00000554198 494 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC138207.8-206ENST00000580053 637 ntTSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 PSMA6P4-201ENST00000603247 718 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 NQO2-209ENST00000606474 470 ntTSL 3 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC072039.2-201ENST00000608883 439 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 MIR6813-201ENST00000621638 56 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC025287.2-201ENST00000621911 668 ntBASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 AC002115.2-201ENST00000640449 603 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
TRAIPQ9BWF2 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 NCOA4P3-201ENST00000513203 1877 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 RNA5SP176-201ENST00000390956 110 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 LDHAP5-201ENST00000394996 622 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 LUZP4P1-201ENST00000415420 344 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 QRSL1P2-201ENST00000418582 964 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 Z82198.3-201ENST00000421145 199 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AP003385.1-201ENST00000426387 893 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AC245047.1-201ENST00000433276 873 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 FBXW12-203ENST00000436231 1117 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AC234771.4-201ENST00000441416 730 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AC016772.1-201ENST00000444170 1261 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 DEFA11P-201ENST00000446470 261 ntBASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC7.67□□□□□ -1.18
TRAIPQ9BWF2 OR51P1P-201ENST00000447547 942 ntBASIC7.67□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms