Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FARSBP1-201ENST00000435808 1778 ntBASIC7.09□□□□□ -1.27
MSX1P28360 KIAA1217-201ENST00000307544 3281 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 RECQL-204ENST00000444129 3702 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
MSX1P28360 SAP18-207ENST00000607003 2234 ntAPPRIS ALT1 TSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
MSX1P28360 AL590065.1-201ENST00000603371 4774 ntBASIC7.09□□□□□ -1.27
MSX1P28360 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.28
MSX1P28360 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.28
MSX1P28360 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
MSX1P28360 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC7.09□□□□□ -1.28
MSX1P28360 NMD3-201ENST00000351193 3049 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
MSX1P28360 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
MSX1P28360 DHX57-203ENST00000457308 4859 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
MSX1P28360 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 LINC01232-204ENST00000626729 2796 ntTSL 2 BASIC7.08□□□□□ -1.28
MSX1P28360 IL15-207ENST00000514653 1388 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 MEF2C-217ENST00000510942 3446 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 GINS4-201ENST00000276533 3841 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 AL022163.1-201ENST00000430261 1569 ntBASIC7.08□□□□□ -1.28
MSX1P28360 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 ZNF10-201ENST00000248211 4441 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 SH3D19-203ENST00000409598 5284 ntAPPRIS ALT1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 GUCY2F-201ENST00000218006 3714 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC7.08□□□□□ -1.28
MSX1P28360 TMEM75-201ENST00000624314 2165 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 GNE-205ENST00000539815 3657 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 PTBP3-203ENST00000343327 2755 ntTSL 2 BASIC7.08□□□□□ -1.28
MSX1P28360 GCNA-202ENST00000373696 2791 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 ORM1-201ENST00000259396 802 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 RNA5SP463-201ENST00000363030 120 ntBASIC7.08□□□□□ -1.28
MSX1P28360 Y_RNA.166-201ENST00000363730 102 ntBASIC7.08□□□□□ -1.28
MSX1P28360 HBS1L-202ENST00000367820 638 ntTSL 3 BASIC7.08□□□□□ -1.28
MSX1P28360 SSX9-201ENST00000376909 591 ntBASIC7.08□□□□□ -1.28
MSX1P28360 RNU6-907P-201ENST00000390924 102 ntBASIC7.08□□□□□ -1.28
MSX1P28360 RNA5SP18-201ENST00000390935 121 ntBASIC7.08□□□□□ -1.28
MSX1P28360 RPL23AP47-201ENST00000408017 460 ntBASIC7.08□□□□□ -1.28
MSX1P28360 PDE11A-203ENST00000409504 2102 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 RNA5SP118-201ENST00000410385 109 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AC004690.1-201ENST00000418216 328 ntBASIC7.08□□□□□ -1.28
MSX1P28360 GAPDHP49-201ENST00000421421 961 ntBASIC7.08□□□□□ -1.28
MSX1P28360 GRPEL2P2-201ENST00000421856 670 ntBASIC7.08□□□□□ -1.28
MSX1P28360 SDCBPP2-201ENST00000424643 885 ntBASIC7.08□□□□□ -1.28
MSX1P28360 OR5P4P-201ENST00000424698 917 ntBASIC7.08□□□□□ -1.28
MSX1P28360 HSPE1P16-201ENST00000426640 348 ntBASIC7.08□□□□□ -1.28
MSX1P28360 SKP1P3-201ENST00000429280 487 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC7.08□□□□□ -1.28
MSX1P28360 PSMD10P2-201ENST00000432890 672 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC7.08□□□□□ -1.28
MSX1P28360 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 MTND3P2-201ENST00000438452 342 ntBASIC7.08□□□□□ -1.28
MSX1P28360 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC7.08□□□□□ -1.28
MSX1P28360 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC7.08□□□□□ -1.28
MSX1P28360 AL606490.1-201ENST00000452266 765 ntBASIC7.08□□□□□ -1.28
MSX1P28360 OR7E7P-201ENST00000455678 1012 ntBASIC7.08□□□□□ -1.28
MSX1P28360 RPS20P20-201ENST00000460498 340 ntBASIC7.08□□□□□ -1.28
MSX1P28360 RN7SL55P-201ENST00000464534 297 ntBASIC7.08□□□□□ -1.28
MSX1P28360 RPL35P6-201ENST00000490024 372 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC7.08□□□□□ -1.28
MSX1P28360 FTH1P23-201ENST00000492727 550 ntBASIC7.08□□□□□ -1.28
MSX1P28360 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
MSX1P28360 RNA5SP287-201ENST00000516358 103 ntBASIC7.08□□□□□ -1.28
MSX1P28360 RNA5SP75-201ENST00000516841 111 ntBASIC7.08□□□□□ -1.28
MSX1P28360 IGLV10-67-201ENST00000519446 325 ntBASIC7.08□□□□□ -1.28
MSX1P28360 CASC19-203ENST00000523510 575 ntTSL 3 BASIC7.08□□□□□ -1.28
MSX1P28360 AP003122.4-201ENST00000530980 758 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AC018523.1-201ENST00000534211 512 ntBASIC7.08□□□□□ -1.28
MSX1P28360 NPIPP1-203ENST00000547107 1071 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AC122134.1-201ENST00000565664 1104 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC7.08□□□□□ -1.28
MSX1P28360 AL355375.2-201ENST00000574825 175 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AC006504.6-201ENST00000590142 199 ntBASIC7.08□□□□□ -1.28
MSX1P28360 MIR7515HG-250ENST00000592565 856 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 PRELID3BP8-201ENST00000604148 295 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AL133255.1-201ENST00000606374 441 ntBASIC7.08□□□□□ -1.28
MSX1P28360 pRNA.12-201ENST00000614353 90 ntBASIC7.08□□□□□ -1.28
MSX1P28360 pRNA.3-201ENST00000615048 90 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AL158196.1-201ENST00000616786 434 ntBASIC7.08□□□□□ -1.28
MSX1P28360 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC7.08□□□□□ -1.28
MSX1P28360 LINC01440-208ENST00000627300 699 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC7.08□□□□□ -1.28
MSX1P28360 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC7.08□□□□□ -1.28
MSX1P28360 TDGF1P3-202ENST00000602699 2710 ntBASIC7.08□□□□□ -1.28
MSX1P28360 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
MSX1P28360 NOS2P3-202ENST00000458685 3328 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
MSX1P28360 SPATA2P1-201ENST00000431223 2055 ntBASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms