Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 GUSBP6-202ENST00000438529 1198 ntBASIC17.51■□□□□ 0.39
VSX1Q9NZR4 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.51■□□□□ 0.39
VSX1Q9NZR4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VSX1Q9NZR4 BX323043.1-201ENST00000641006 1765 ntBASIC17.51■□□□□ 0.39
VSX1Q9NZR4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 NCF1B-203ENST00000435988 1254 ntBASIC17.5■□□□□ 0.39
VSX1Q9NZR4 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 AC091874.3-201ENST00000512672 1195 ntBASIC17.5■□□□□ 0.39
VSX1Q9NZR4 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VSX1Q9NZR4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 TFP1-202ENST00000475455 1573 ntBASIC17.49■□□□□ 0.39
VSX1Q9NZR4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 SLC29A4P1-201ENST00000398760 971 ntBASIC17.49■□□□□ 0.39
VSX1Q9NZR4 TSPY6P-201ENST00000448518 926 ntBASIC17.49■□□□□ 0.39
VSX1Q9NZR4 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 Z82202.1-201ENST00000623446 1880 ntBASIC17.49■□□□□ 0.39
VSX1Q9NZR4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VSX1Q9NZR4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.48■□□□□ 0.39
VSX1Q9NZR4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms