Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH9Q9HC56 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH9Q9HC56 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.24■□□□□ 0.83
PCDH9Q9HC56 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 AL032819.2-201ENST00000624543 2162 ntBASIC20.24■□□□□ 0.83
PCDH9Q9HC56 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 HLA-B-256ENST00000639848 1089 ntBASIC20.24■□□□□ 0.83
PCDH9Q9HC56 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 RNF165-205ENST00000588679 2904 ntBASIC20.24■□□□□ 0.83
PCDH9Q9HC56 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PCDH9Q9HC56 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH9Q9HC56 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 AC060766.5-201ENST00000590539 871 ntBASIC20.22■□□□□ 0.83
PCDH9Q9HC56 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.22■□□□□ 0.83
PCDH9Q9HC56 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms