Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIME1Q9H400 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.24■□□□□ 0.35
LIME1Q9H400 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.24■□□□□ 0.35
LIME1Q9H400 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
LIME1Q9H400 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LIME1Q9H400 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.24■□□□□ 0.35
LIME1Q9H400 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.24■□□□□ 0.35
LIME1Q9H400 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LIME1Q9H400 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.24■□□□□ 0.35
LIME1Q9H400 REXO1L10P-201ENST00000615707 1290 ntBASIC17.24■□□□□ 0.35
LIME1Q9H400 AL121829.2-201ENST00000620908 328 ntBASIC17.24■□□□□ 0.35
LIME1Q9H400 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.24■□□□□ 0.35
LIME1Q9H400 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 LINC01568-207ENST00000641790 1380 ntBASIC17.24■□□□□ 0.35
LIME1Q9H400 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIME1Q9H400 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 AC099778.1-201ENST00000568593 1911 ntBASIC17.23■□□□□ 0.35
LIME1Q9H400 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.23■□□□□ 0.35
LIME1Q9H400 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 AL390955.1-201ENST00000428694 934 ntBASIC17.23■□□□□ 0.35
LIME1Q9H400 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.23■□□□□ 0.35
LIME1Q9H400 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.23■□□□□ 0.35
LIME1Q9H400 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.23■□□□□ 0.35
LIME1Q9H400 AC073195.1-201ENST00000607241 877 ntBASIC17.23■□□□□ 0.35
LIME1Q9H400 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.23■□□□□ 0.35
LIME1Q9H400 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.23■□□□□ 0.35
LIME1Q9H400 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC17.23■□□□□ 0.35
LIME1Q9H400 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.23■□□□□ 0.35
LIME1Q9H400 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 CYP2D8P-201ENST00000433633 1490 ntBASIC17.23■□□□□ 0.35
LIME1Q9H400 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.23■□□□□ 0.35
LIME1Q9H400 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LIME1Q9H400 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LIME1Q9H400 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LIME1Q9H400 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.22■□□□□ 0.35
LIME1Q9H400 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.22■□□□□ 0.35
LIME1Q9H400 UNC93B2-201ENST00000285383 730 ntBASIC17.22■□□□□ 0.35
LIME1Q9H400 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.22■□□□□ 0.35
LIME1Q9H400 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.22■□□□□ 0.35
LIME1Q9H400 NUDT16P1-203ENST00000513809 620 ntBASIC17.22■□□□□ 0.35
LIME1Q9H400 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LIME1Q9H400 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.22■□□□□ 0.35
LIME1Q9H400 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LIME1Q9H400 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC17.22■□□□□ 0.35
LIME1Q9H400 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LIME1Q9H400 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.22■□□□□ 0.35
LIME1Q9H400 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.21■□□□□ 0.35
LIME1Q9H400 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.21■□□□□ 0.35
LIME1Q9H400 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LIME1Q9H400 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.21■□□□□ 0.35
LIME1Q9H400 AC113347.1-201ENST00000413321 391 ntBASIC17.21■□□□□ 0.35
LIME1Q9H400 AL353807.1-201ENST00000427475 662 ntBASIC17.21■□□□□ 0.35
LIME1Q9H400 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.21■□□□□ 0.35
LIME1Q9H400 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.21■□□□□ 0.35
LIME1Q9H400 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LIME1Q9H400 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.21■□□□□ 0.35
LIME1Q9H400 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.21■□□□□ 0.35
LIME1Q9H400 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LIME1Q9H400 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms